RetrogeneDB ID: | retro_sscr_237 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 10:79035802..79036449(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTEN | ||
Ensembl ID: | ENSSSCG00000010440 | ||
Aliases: | None | ||
Description: | phosphatase and tensin homolog [Source:HGNC Symbol;Acc:9588] |
Percent Identity: | 90. % |
Parental protein coverage: | 54.34 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MTAIIKEIVSRNKRRYQEDGFDLDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNL |
M.AIIKEIVSRNKRRYQE.GFDLDLTYIYPNIIA.GFPAERL.G.YRNNIDDVVR.LDSKHKNHYKIYNL | |
Retrocopy | MIAIIKEIVSRNKRRYQENGFDLDLTYIYPNIIALGFPAERL*GIYRNNIDDVVRILDSKHKNHYKIYNL |
Parental | CAERHYDTAKFNCRVAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYLL |
CAERHYDTA.FNCRVAQYPFEDHNPPQLE.IKPFCEDLDQWLSEDDNHVAAIHCK.GKG.TGVMICAYL. | |
Retrocopy | CAERHYDTATFNCRVAQYPFEDHNPPQLEFIKPFCEDLDQWLSEDDNHVAAIHCKPGKG*TGVMICAYLF |
Parental | HRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVYYYSYLLKNHLDYRPV-ALLFHKMMFETIPMFSGG |
H.GKFLKAQ...DFYGEVRTRDKKGVT.PSQ..YVYYYSYLLKNHLDYRPV.ALLF.KM.FETIP.FSGG | |
Retrocopy | HPGKFLKAQ---DFYGEVRTRDKKGVTLPSQSHYVYYYSYLLKNHLDYRPV<ALLFRKMLFETIPVFSGG |
Parental | TCNPQFVVCQ |
TCNPQFVVCQ | |
Retrocopy | TCNPQFVVCQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 13 .01 RPM |
SRP014902_testis | 0 .00 RPM | 24 .75 RPM |
SRP018288_heart | 0 .00 RPM | 60 .64 RPM |
SRP018288_kidney | 0 .00 RPM | 31 .13 RPM |
SRP018288_liver | 0 .00 RPM | 36 .30 RPM |
SRP018288_lung | 0 .00 RPM | 112 .01 RPM |
SRP018856_adipose | 0 .00 RPM | 29 .42 RPM |
SRP035408_brain | 0 .00 RPM | 6 .99 RPM |
SRP035408_liver | 0 .00 RPM | 15 .97 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009252 | 1 retrocopy | |
Homo sapiens | ENSG00000171862 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000893 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012141 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002448 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000003709 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010440 | 2 retrocopies |
retro_sscr_236, retro_sscr_237 ,
|