Parental gene:

LSM5, ENSSTOG00000012662

Aliases:None
Description:LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17162]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393288.1:8541737..8545261(-)


>ENSSTOG00000012662
ATGGCGGCTAACGCTACAACCAACCCGTCGCAGCTGCTGCCGCTAGAGCTTGTGGACAAGTGTATAGGATCACGAATTCA
CATTGTGATGAAGAGTGATAAGGAAATTGTTGGAACACTTCTAGGATTTGATGACTTTGTCAATATGGTGCTGGAAGATG
TCACTGAGTTTGAAATCACACCAGAAGGAAGACGGATTACTAAATTAGATCAGATTTTGCTAAATGGAAATAATATAACG
ATGCTGGTTCCTGGAGGAGAAGGACCTGAAGTGTGA

Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000005335 ortholog_one2one 1 retrogene
retro_chof_1042,
Callithrix jacchus ENSCJAG00000009185 possible_ortholog 3 retrogenes
retro_cjac_1883, retro_cjac_2760, retro_cjac_3068,
Dasypus novemcinctus ENSDNOG00000008121 ortholog_one2one 1 retrogene
retro_dnov_1836,
Echinops telfairi ENSETEG00000018068 ortholog_one2many 8 retrogenes
retro_etel_1305, retro_etel_1502, retro_etel_1907, retro_etel_198, retro_etel_2054, retro_etel_2193, retro_etel_454, retro_etel_964,
Pongo abelii ENSPPYG00000017661 possible_ortholog 1 retrogene
retro_pabe_3449,
Rattus norvegicus ENSRNOG00000042126 possible_ortholog 3 retrogenes
retro_rnor_1171, retro_rnor_567, retro_rnor_694,
Tarsius syrichta ENSTSYG00000006449 ortholog_one2one 9 retrogenes
retro_tsyr_1022, retro_tsyr_1080, retro_tsyr_1579, retro_tsyr_181, retro_tsyr_1837, retro_tsyr_1863, retro_tsyr_1963, retro_tsyr_577, retro_tsyr_96,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_188 78.82 92.31
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2. retro_itri_222 65.33 80.22
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3. retro_itri_415 82.72 89.01
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4. retro_itri_1199 52.73 58.24
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Download FASTA sequences of all ENSSTOG00000012662 retrocopies