RetrogeneDB ID: | retro_acar_134 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 5:87483430..87483940(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMD10 | ||
Ensembl ID: | ENSACAG00000012006 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 [Source:HGNC Symbol;Acc:9555] |
Percent Identity: | 83.53 % |
Parental protein coverage: | 70.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VDLLLSLGAPVNDKDDAGWSPLHIAASAGREEIVKDLLKEGAQVNAVNQNGCTPLHYAASKNKQEIALML |
V.L.LSLGAP.N.KDDAG.SPLHI.A..GREEIVK.LLK.GAQVNA.NQNGC..LHY..SKNKQEI.LML | |
Retrocopy | VNLFLSLGAPINVKDDAG*SPLHITALDGREEIVKVLLKKGAQVNAINQNGCISLHYITSKNKQEITLML |
Parental | LENKANPDAKDHMGSTPLHRAASKGNLKMIQILLKHKASANLQDSEGNTALHLACDEERVDEAKLLVSQG |
LENKAN.DAKDHMGSTPLHRAASKGNLKMIQIL.KHKA..NLQDSE..TALHLAC.EERV.E.KLLVSQG | |
Retrocopy | LENKANLDAKDHMGSTPLHRAASKGNLKMIQILSKHKACPNLQDSERKTALHLACNEERVHETKLLVSQG |
Parental | ASIYIENKEEKTPLQVAKGGLGSILRRLAE |
.SIYIENKEEKTP.QVAKGGLGSILRRL.E | |
Retrocopy | SSIYIENKEEKTPFQVAKGGLGSILRRLIE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 7 .52 RPM |
SRP009831_brain | 0 .00 RPM | 4 .02 RPM |
SRP009831_dewlap | 0 .00 RPM | 8 .31 RPM |
SRP009831_embryo | 0 .00 RPM | 11 .44 RPM |
SRP009831_heart | 0 .00 RPM | 7 .32 RPM |
SRP009831_liver | 0 .00 RPM | 2 .74 RPM |
SRP009831_lung | 0 .00 RPM | 4 .43 RPM |
SRP009831_ovary | 0 .00 RPM | 9 .42 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 1 .82 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000012006 | 1 retrocopy |
retro_acar_134 ,
|
Callithrix jacchus | ENSCJAG00000007717 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000015068 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001902 | 5 retrocopies | |
Homo sapiens | ENSG00000101843 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000002969 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000002059 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014534 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016981 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014001 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010837 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006419 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005221 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020618 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000022169 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003783 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000009920 | 13 retrocopies |