RetrogeneDB ID: | retro_dnov_824 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_11124:84818..85359(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMD10 | ||
Ensembl ID: | ENSDNOG00000001902 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 [Source:HGNC Symbol;Acc:9555] |
Percent Identity: | 77.35 % |
Parental protein coverage: | 79.91 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | VSNLMVCNLAYS-KLQELKEKILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW |
VSNL.VC....S.KLQELKEKILADKSL.TR.DQDSRTAL.WACSAGH.E.VEF..QLGV.VN.K.DAGW | |
Retrocopy | VSNLRVCIWPCSGKLQELKEKILADKSLVTRIDQDSRTALCWACSAGHSENVEFCIQLGV*VNHKVDAGW |
Parental | SPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHFEATAM |
S.LH.AASAGRDEIV.ALLGK.AQVN..VNQ....PLH.AASKNRHEIAVMLLEGGAN.DAKDHF.ATAM | |
Retrocopy | SSLHVAASAGRDEIVNALLGKVAQVN>VVNQSSYSPLHCAASKNRHEIAVMLLEGGANLDAKDHFQATAM |
Parental | HRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER |
H.AAAK.NLKMI.ILLYYK.STNIQD.E.NT.L.L...E.R | |
Retrocopy | HWAAAKSNLKMINILLYYKTSTNIQDRERNTTLSL**GESR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 10 .11 RPM |
SRP012922_cerebellum | 0 .00 RPM | 20 .90 RPM |
SRP012922_heart | 0 .00 RPM | 3 .94 RPM |
SRP012922_kidney | 0 .00 RPM | 13 .69 RPM |
SRP012922_liver | 0 .00 RPM | 3 .72 RPM |
SRP012922_lung | 0 .00 RPM | 11 .00 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 4 .33 RPM |
SRP012922_spleen | 0 .00 RPM | 9 .39 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000012006 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007717 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000015068 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001902 | 5 retrocopies | |
Homo sapiens | ENSG00000101843 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000002969 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000002059 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014534 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016981 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014001 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010837 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006419 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005221 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020618 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000022169 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003783 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000009920 | 13 retrocopies |