RetrogeneDB ID: | retro_acar_165 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343247.1:1796316..1796747(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL11 | ||
Ensembl ID: | ENSACAG00000005058 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.07 % |
Parental protein coverage: | 80.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGN |
RA.KV.EQ.TGQTPVFSK.RY.V.SFGIRRNE.IAVHCTV.GAKAEEILEKGLKVREY.LRKNNFS.TGN | |
Retrocopy | RASKVREQITGQTPVFSKVRYIVCSFGIRRNENIAVHCTVCGAKAEEILEKGLKVREYKLRKNNFSNTGN |
Parental | FGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGSIGAKHRISK-EEAMRWFQQKYDGI |
FGFGIQE.IDLGI..DPSIGIY.LDFYV.LGRPGF..A.KK..TG.IGAKH.ISK..EAM.WFQQK.DGI | |
Retrocopy | FGFGIQENIDLGIIFDPSIGIYDLDFYVILGRPGFITAVKKC*TGRIGAKHKISK<KEAMWWFQQKHDGI |
Parental | ILPGK |
ILPGK | |
Retrocopy | ILPGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .03 RPM | 2261 .50 RPM |
SRP009831_brain | 0 .09 RPM | 247 .97 RPM |
SRP009831_dewlap | 0 .04 RPM | 390 .86 RPM |
SRP009831_embryo | 0 .00 RPM | 866 .71 RPM |
SRP009831_heart | 0 .00 RPM | 528 .52 RPM |
SRP009831_liver | 0 .00 RPM | 698 .45 RPM |
SRP009831_lung | 0 .00 RPM | 350 .34 RPM |
SRP009831_ovary | 0 .00 RPM | 253 .54 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 171 .80 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000005058 | 1 retrocopy |
retro_acar_165 ,
|
Ailuropoda melanoleuca | ENSAMEG00000009704 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000013232 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000008432 | 2 retrocopies | |
Equus caballus | ENSECAG00000021136 | 3 retrocopies | |
Felis catus | ENSFCAG00000028651 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000014628 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000013738 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000008868 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000002445 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000012828 | 1 retrocopy | |
Mus musculus | ENSMUSG00000059291 | 3 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000000321 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000032741 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000026260 | 9 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006767 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016115 | 4 retrocopies |