RetrogeneDB ID: | retro_amel_1733 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL194123.1:24375..24807(-) | ||
Located in intron of: | ENSAMEG00000003056 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA1 | ||
Ensembl ID: | ENSAMEG00000002440 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530] |
Percent Identity: | 82.64 % |
Parental protein coverage: | 54.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | PLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTY |
PLPVS.LVSLIGSKTQI.TQR.GRRPYG.GLLIA..DD.GPHIFQTCPSANYFDCRAMS.GA.SQSA.TY | |
Retrocopy | PLPVSHLVSLIGSKTQIQTQRCGRRPYGTGLLIADDDDVGPHIFQTCPSANYFDCRAMSTGACSQSACTY |
Parental | LERHMSGFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQ |
LERHMSGFME.NLNE.V.HGL.AL.ETLPAEQDLTTKNVSI.IV.KDLEF.IYDDDD.SPFLEGLE.... | |
Retrocopy | LERHMSGFMESNLNEPVIHGLCAL*ETLPAEQDLTTKNVSIRIVDKDLEFMIYDDDDISPFLEGLEDHRE |
Parental | RKAQ |
R..Q | |
Retrocopy | RHSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |