RetrogeneDB ID: | retro_meug_71 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_1209:19916..20383(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA1 | ||
Ensembl ID: | ENSMEUG00000011112 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530] |
Percent Identity: | 77.71 % |
Parental protein coverage: | 59.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKI-LHVDNHIGISIAGLT |
.TVWS.QGRIHQIEY..EAV.Q.S.T.GLKSKT.A.LVALKRAQSEL........LHVDNHI.ISIA... | |
Retrocopy | ITVWSLQGRIHQIEYTVEAVRQASVTLGLKSKTQAILVALKRAQSELGPYXXXF<LHVDNHIKISIARFN |
Parental | ADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTC |
ADARLLCNFM.QECLDSRFVFDRP.PVS.LVSLIGSKTQIPTQ.YG.RPYGVGLLI.GYDDMG.HIF.T. | |
Retrocopy | ADARLLCNFMCQECLDSRFVFDRPHPVSCLVSLIGSKTQIPTQHYGWRPYGVGLLIIGYDDMGSHIF*TF |
Parental | PSANYFDCRAMSIGARS |
PSANYF.C.A.SIGA.S | |
Retrocopy | PSANYFGCWARSIGAHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |