RetrogeneDB ID: | retro_chof_2626 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_92159:33..562(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA1 | ||
Ensembl ID: | ENSCHOG00000005395 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530] |
Percent Identity: | 71.51 % |
Parental protein coverage: | 65.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKR-AQSELAAHQKKI-LHVDNH |
FRNQYDN.VTVWSPQGRIHQ.EYAME.VKQGSA.VGLK.K.HAVL.ALKR..Q.E.AA......LHVD.H | |
Retrocopy | FRNQYDNTVTVWSPQGRIHQTEYAMETVKQGSAMVGLKLKIHAVLSALKR<TQLEPAAYXXXXXLHVDKH |
Parental | IGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRR-PYGVGLLIAGYD |
.GISIAGLTADARLLCNF..QE.L.SRFVFDRPL..S..VSLIGSKTQI.TQR.G.R....V.LLIAGYD | |
Retrocopy | TGISIAGLTADARLLCNFVYQEYLYSRFVFDRPLSMSHFVSLIGSKTQITTQRHGQR<TQAVRLLIAGYD |
Parental | DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMS |
D.G.HIFQTCPS.NY.D.RAMSIG...Q...T....H.S | |
Retrocopy | DVGSHIFQTCPSTNYSDGRAMSIGVCYQLVLT*RDIHLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |