RetrogeneDB ID: | retro_tbel_982 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3498:129382..129826(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA1 | ||
Ensembl ID: | ENSTBEG00000012037 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530] |
Percent Identity: | 82.43 % |
Parental protein coverage: | 55.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMDXXXX |
TQIPTQ.YG.RP..VGLLIAGYDDMGPHIFQTCPSANYFDCRAMS.GARSQSA.TYLER.MSEFMD.... | |
Retrocopy | TQIPTQQYGQRPCDVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSTGARSQSACTYLERRMSEFMDCNLN |
Parental | XXXXXXXRALSETLPAEQDISTQNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQRKAQPAQPADEPAE |
.......RAL.ETLPAEQD....NVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQRK.QP.QPADEPAE | |
Retrocopy | KQVKHGLRALRETLPAEQDLTIKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQRKVQPIQPADEPAE |
Parental | KADEPMEH |
K.DEPMEH | |
Retrocopy | KHDEPMEH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |