RetrogeneDB ID: | retro_tbel_2629 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_114687:63155..63604(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA1 | ||
Ensembl ID: | ENSTBEG00000012037 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530] |
Percent Identity: | 84.11 % |
Parental protein coverage: | 55.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | TQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMDXXXX |
TQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSA.TYLERHMSEFMD.... | |
Retrocopy | TQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSAHTYLERHMSEFMDCNLN |
Parental | XXXXXXXRALSETLPAEQDISTQNVSIGIVGKDLEFTIYD-DDDVSPFLEG-LEERP-QRKAQPAQPADE |
........AL.ETLPAEQD..T.NVSIGI.GKDLEFTIYD.DDDVSPFLEG.L...P.QRKAQPAQPADE | |
Retrocopy | KLVKHGLCALRETLPAEQDLTTKNVSIGIFGKDLEFTIYDNDDDVSPFLEG>LKKDP>QRKAQPAQPADE |
Parental | PAEKADEPMEH |
PAEKADEPMEH | |
Retrocopy | PAEKADEPMEH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |