RetrogeneDB ID: | retro_fcat_972 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:79709167..79709636(+) | ||
Located in intron of: | ENSFCAG00000030176 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA1 | ||
Ensembl ID: | ENSFCAG00000011381 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530] |
Percent Identity: | 77.22 % |
Parental protein coverage: | 60.15 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | THAVLVALKRAQSELAAHQKKLHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLI |
TH.V...............K.LHVDN.IGIS..GLTADARLLCNFM.QECLDSRFVFDRPLP.S.LVSLI | |
Retrocopy | THSVGCIEDSIVRACSSSEKILHVDNYIGISVVGLTADARLLCNFMHQECLDSRFVFDRPLPTSHLVSLI |
Parental | GSKTQIPTQRYGRRPYGVGLLIAGYDDMGP-HIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSGFME |
.SKTQIPTQRYG.RPYGVGLLI.GY...GP.HIFQTC.SANYFDCRAMSIGA..Q.ARTYL.RHMSGFME | |
Retrocopy | ESKTQIPTQRYGQRPYGVGLLIVGY-EYGP>HIFQTCLSANYFDCRAMSIGACFQ*ARTYLVRHMSGFME |
Parental | CNLNELVKHGLRALRETL |
CNLNELVKHGLRAL.ETL | |
Retrocopy | CNLNELVKHGLRAL*ETL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 45 .79 RPM |
SRP017611_kidney | 0 .00 RPM | 52 .66 RPM |
SRP017611_liver | 0 .00 RPM | 36 .39 RPM |