RetrogeneDB ID: | retro_amel_236 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192362.1:1987434..1987727(-) | ||
Located in intron of: | ENSAMEG00000011646 | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000011690 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUMO1 | ||
Ensembl ID: | ENSAMEG00000013225 | ||
Aliases: | None | ||
Description: | small ubiquitin-like modifier 1 [Source:HGNC Symbol;Acc:12502] |
Percent Identity: | 77.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKES-YCQRQGVPMNSLRFLFEGQRIA |
QEAKPS.E.LGDKK.GEYIKLKVIGQD.SEIHFKVKMTT.LKKLKES...QRQG.PMNS.RFL..GQRI. | |
Retrocopy | QEAKPSAENLGDKKAGEYIKLKVIGQDISEIHFKVKMTTQLKKLKES<PSQRQGLPMNSPRFLCRGQRIT |
Parental | DNHTPKELGMEEEDVIEVYQEQTGGHSTI |
DNHTPKELGMEEEDV.EV.QE..G..... | |
Retrocopy | DNHTPKELGMEEEDVVEVLQE*MGSFNNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002071 | 3 retrocopies | |
Ailuropoda melanoleuca | ENSAMEG00000009189 | 13 retrocopies | |
Ailuropoda melanoleuca | ENSAMEG00000013225 | 5 retrocopies | |
Bos taurus | ENSBTAG00000009859 | 6 retrocopies | |
Canis familiaris | ENSCAFG00000012431 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000009739 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000015868 | 10 retrocopies | |
Felis catus | ENSFCAG00000031005 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000022855 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000007504 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006997 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000030345 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013083 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012817 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011968 | 1 retrocopy |