RetrogeneDB ID:

retro_fcat_26

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:A2:24032136..24032418(+)
Located in intron of:ENSFCAG00000010208
Retrocopy
information
Ensembl ID:ENSFCAG00000025028
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000031005
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_26
ATGTCTGACCAGGAGCCAAAACCTTCAACTGAGGACTTGTGGGATAAGAAGGTAGGAGAACACATTAAACTGAAAGTCAT
TGGACAGGATAGCAGTGAGATTCAGTTCAAAGTGAAAATGACAACACACCTCAATAAACTCAAAACATCACACTGCCAAA
GACAGAGTGTTCCAATGAATTCACTCAGGTTTCTCTTTGAAGATCAGAGAAGTGCTGATAATTACACTCCAAAAGAAACT
GGAATGGAGGAAGATGTGATTGAAGTTTATCAGGAACAATGA

ORF - retro_fcat_26 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.62 %
Parental protein coverage: 90.1 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD
QE.KPSTEDL.DKK.GE.IKLKVIGQDSSEI.FKVKMTTHL.KLK.S.CQRQ.VPMNSLRFLFE.QR.AD
RetrocopyQEPKPSTEDLWDKKVGEHIKLKVIGQDSSEIQFKVKMTTHLNKLKTSHCQRQSVPMNSLRFLFEDQRSAD
ParentalNHTPKELGMEEEDVIEVYQEQ
N.TPKE.GM.EEDVIEVYQEQ
RetrocopyNYTPKETGM-EEDVIEVYQEQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 24 .56 RPM
SRP017611_kidney 0 .10 RPM 26 .69 RPM
SRP017611_liver 0 .00 RPM 10 .82 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_26 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_26 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 29 parental genes, and 120 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000132255 retrocopies
Bos taurus ENSBTAG000000098596 retrocopies
Canis familiaris ENSCAFG000000124318 retrocopies
Choloepus hoffmanni ENSCHOG000000097392 retrocopies
Callithrix jacchus ENSCJAG000000049613 retrocopies
Cavia porcellus ENSCPOG000000121431 retrocopy
Dasypus novemcinctus ENSDNOG0000001586810 retrocopies
Equus caballus ENSECAG000000246934 retrocopies
Erinaceus europaeus ENSEEUG000000131616 retrocopies
Felis catus ENSFCAG000000265504 retrocopies
Felis catus ENSFCAG00000031005 6 retrocopies
Homo sapiens ENSG000001160305 retrocopies
Gorilla gorilla ENSGGOG000000264395 retrocopies
Loxodonta africana ENSLAFG000000228555 retrocopies
Microcebus murinus ENSMICG000000089685 retrocopies
Myotis lucifugus ENSMLUG000000075042 retrocopies
Macaca mulatta ENSMMUG000000052407 retrocopies
Mustela putorius furoENSMPUG000000003352 retrocopies
Mus musculus ENSMUSG000000260215 retrocopies
Nomascus leucogenys ENSNLEG000000069974 retrocopies
Otolemur garnettii ENSOGAG000000303451 retrocopy
Procavia capensis ENSPCAG000000068701 retrocopy
Pongo abelii ENSPPYG000000130833 retrocopies
Pan troglodytes ENSPTRG000000128171 retrocopy
Rattus norvegicus ENSRNOG000000161332 retrocopies
Sorex araneus ENSSARG000000082058 retrocopies
Sarcophilus harrisii ENSSHAG000000119681 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000254054 retrocopies
Tursiops truncatus ENSTTRG000000006424 retrocopies



Copyright © RetrogeneDB 2014-2017