RetrogeneDB ID: | retro_fcat_862 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:113044204..113044468(+) | ||
Located in intron of: | ENSFCAG00000025187 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000031005 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.76 % |
Parental protein coverage: | 88.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | EAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN |
EAKPSTEDLGDKKEGEYIKL..IG.DS.EI.FKVKMTTHL.KLKESYC.RQGVPMNSLRFLFEGQRI.DN | |
Retrocopy | EAKPSTEDLGDKKEGEYIKLN-IG*DSIEICFKVKMTTHLMKLKESYC*RQGVPMNSLRFLFEGQRITDN |
Parental | HTPKELGMEEEDVIEVYQE |
HT.KELGMEE.DVIEVYQE | |
Retrocopy | HTAKELGMEEDDVIEVYQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 24 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .69 RPM |
SRP017611_liver | 0 .00 RPM | 10 .82 RPM |