RetrogeneDB ID: | retro_amel_468 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192459.1:427872..428366(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SDHC | ||
Ensembl ID: | ENSAMEG00000015351 | ||
Aliases: | None | ||
Description: | succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa [Source:HGNC Symbol;Acc:10682] |
Percent Identity: | 77.11 % |
Parental protein coverage: | 97.63 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LSCRHVGRHCLRAHLSPRLCIRNAVPLGTTAKEEMERFWNKNTDLNRPLSPHITIYSWSLPMAMSICHRG |
L..RHV..H.L.AHLSPRLCIRNAVPLGTTAKEE.ERF..KNT.LN.PL..HITIYS.SLPMA.SICH.G | |
Retrocopy | LLLRHVSCHYLCAHLSPRLCIRNAVPLGTTAKEEIERFCKKNTSLNCPLFLHITIYS*SLPMAISICHCG |
Parental | TGVA-LSAGVSLFGLSALLIPGNFESHLELVKSLCLGPSLIYTAKFALVFPLMYHTWNGIRHLVWDLGKG |
TG.A.LS.GVSLFGL...L.PGNF.SHLELVKSLCLG.SLIYTAKFALVFPLMY.TWNGI.HL.WDL.KG | |
Retrocopy | TGMA<LSTGVSLFGLLSPLAPGNFQSHLELVKSLCLGRSLIYTAKFALVFPLMYDTWNGI*HLMWDLEKG |
Parental | LKIPQLYQSGVAVLVLTVLSSVGLAA |
LK..Q.Y.SG..VLVLT.LSS.GL.A | |
Retrocopy | LKLLQVYKSGKVVLVLTGLSSAGLTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015351 | 2 retrocopies |
retro_amel_468 , retro_amel_803,
|
Bos taurus | ENSBTAG00000015853 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012992 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000004757 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000015767 | 1 retrocopy | |
Felis catus | ENSFCAG00000000499 | 1 retrocopy | |
Homo sapiens | ENSG00000143252 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000008017 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000012411 | 11 retrocopies | |
Mustela putorius furo | ENSMPUG00000014439 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014367 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000001585 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005544 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000003163 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016835 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030318 | 2 retrocopies | |
Takifugu rubripes | ENSTRUG00000001873 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009234 | 1 retrocopy |