RetrogeneDB ID: | retro_rnor_1487 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:44162621..44163075(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Sdhc | ||
Ensembl ID: | ENSRNOG00000003163 | ||
Aliases: | None | ||
Description: | succinate dehydrogenase complex, subunit C [Source:RefSeq peptide;Acc:NP_001005534] |
Percent Identity: | 87.5 % |
Parental protein coverage: | 89.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SSQLCIRNAAPLGTTAKEEMARFWNKNTSSNRPVSPHLTIYRWSLPMAMSVCHRGSGIAMSGG-VSLFGL |
..QL.IRNAAPLGTTAKEEMA.FWNKNTSSNRPVSPHLTIYRWSLP.AM.VCHRGSGIA.SGG.VSL.GL | |
Retrocopy | TTQLRIRNAAPLGTTAKEEMAQFWNKNTSSNRPVSPHLTIYRWSLPTAMPVCHRGSGIALSGG>VSLSGL |
Parental | SALLLPGNFESYLMLVKSLCLGPALIHAAKFVLVFPLMYHSLNGVRHLMWDLGKGLSISQVQLSGVTVLV |
.ALLLPGNFESYLMLVKSL.LGPALIHAAKFVLVF..MYH.LNGV.HLMWDLGKGL.I.QVQLSG.TV.V | |
Retrocopy | WALLLPGNFESYLMLVKSLYLGPALIHAAKFVLVFLFMYHTLNGVCHLMWDLGKGLAIPQVQLSGMTVSV |
Parental | LAVLSSAGLAAI |
LAVLSSAGLAAI | |
Retrocopy | LAVLSSAGLAAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 85 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 370 .26 RPM |
SRP017611_liver | 0 .00 RPM | 108 .05 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015351 | 2 retrocopies | |
Bos taurus | ENSBTAG00000015853 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012992 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000004757 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000015767 | 1 retrocopy | |
Felis catus | ENSFCAG00000000499 | 1 retrocopy | |
Homo sapiens | ENSG00000143252 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000008017 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000012411 | 11 retrocopies | |
Mustela putorius furo | ENSMPUG00000014439 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014367 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000001585 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005544 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000003163 | 2 retrocopies |
retro_rnor_1486, retro_rnor_1487 ,
|
Sarcophilus harrisii | ENSSHAG00000016835 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030318 | 2 retrocopies | |
Takifugu rubripes | ENSTRUG00000001873 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009234 | 1 retrocopy |