RetrogeneDB ID:

retro_amel_8

Retrocopy
location
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192545.1:1293223..1294276(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSAMEG00000018858
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:TMEM185A
Ensembl ID:ENSAMEG00000009351
Aliases:None
Description:transmembrane protein 185A [Source:HGNC Symbol;Acc:17125]


Retrocopy-Parental alignment summary:






>retro_amel_8
ATGAACCCCAGGGGCCTGTTCCAGGACTTCAACCCGAGTAAGTTCCTCATCTACGCCTGCCTGCTGCTCTTCTCGGTGCT
GCTGCCCCTCCGCCTGGACGGCATCATCCAGTGGAGCTACTGGGCCGTCTTCGCCCCCATATGGCTGTGGAAGCTGCTGG
TCATCGCCGGCGCCTCCGTGGGCGCGGGCGTTTGGGCCCGCAACCCCCGATACCGCACCGAGGGGGAGGCCTGCGTGGAG
TTCAAAGCCATGTTGATCGCCGTGGCCATCCACTTGCTGCTGCTCATGTTCGAAGTCCTGGTCTGCGACAGGGTGGAGAG
GGGGACCCACTTCTGGCTGCTGGTCTTCATGCCACTTTTCTTCGTATCCCCAGTGTCCGTGGCCGCCTGCGTCTGGGGCT
TCCGACACGATAGGTCGCTAGAGCTGGAGATCCTGTGCTCTGTCAACATCCTGCAGTTCATCTTCATCGCCCTGAGGCTG
GACAGGATTATCCACTGGCCGTGGCTAGTGGTGTTCGTGCCCCTGTGGATTCTCATGTCGTTCCTCTGCCTAGTCGTCCT
CTATAACATCGTCTGGTCCCTCCTGTTCCTGCGCTCCTTGGATGTGGTTGCGGAACAGCGGAGGACACACGTGACCATGG
CCATCAGCTGGATAACGATTGTCGTGCCCTTGCTCACTTTTGAGGTTCTGCTAGTTCACAGATTAGATGGCCACAACACG
TTCTCTTACATCGCCATATTTGTCCCCCTTTGGCTTTCGTTGATAACTTTAATGGCCACGACATTTAGGCGAAAAGGAGG
CAATCATTGGTGGTTTGGTATTCGCAGAGATTTCTGTCAGTTTCTGCTTGAAATTTTCCCATTTTTAAGAGAATATGGGA
ACATTTCCTATGATCTACAGCACGAAGACAGTGAAGATGCTGAAGAAACATCAGTTCCGGATGCTCCGAAAATTGCTCCG
ATGTTTGGAAAGAAGGCCAGGGTAGTCATAACCCAGAGTCCTGGGAAATATGTTCCCCCGCCTCCCAAGTTAAATATTGA
TATGCCGGATTAA

ORF - retro_amel_8 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.86 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMNLRGLFQDFNPSKFLIYACLLLFSVLLALRLDGIIQWSYWAVFAPIWLWKLMVIVGASVGTGVWARNPQ
MN.RGLFQDFNPSKFLIYACLLLFSVLL.LRLDGIIQWSYWAVFAPIWLWKL.VI.GASVG.GVWARNP.
RetrocopyMNPRGLFQDFNPSKFLIYACLLLFSVLLPLRLDGIIQWSYWAVFAPIWLWKLLVIAGASVGAGVWARNPR
ParentalYRAEGETCVEFKAMLIAVGIHLLLLMFEVLVCDRIERGSHFWLLVFMPLFFVSPVSVAACVWGFRHDRSL
YR.EGE.CVEFKAMLIAV.IHLLLLMFEVLVCDR.ERG.HFWLLVFMPLFFVSPVSVAACVWGFRHDRSL
RetrocopyYRTEGEACVEFKAMLIAVAIHLLLLMFEVLVCDRVERGTHFWLLVFMPLFFVSPVSVAACVWGFRHDRSL
ParentalELEILCSVNILQFIFIALRLDKIIHWPWLVVCVPLWILMSFLCLVVLYYIVWSVLFLRSMDVIAEQRRTH
ELEILCSVNILQFIFIALRLD.IIHWPWLVV.VPLWILMSFLCLVVLY.IVWS.LFLRS.DV.AEQRRTH
RetrocopyELEILCSVNILQFIFIALRLDRIIHWPWLVVFVPLWILMSFLCLVVLYNIVWSLLFLRSLDVVAEQRRTH
ParentalITMALSWMTIVVPLLTFEILLVHKLDGHNAFSCIPIFVPLWLSLITLMATTFGQKGGNHWWFGIRKDFCQ
.TMA.SW.TIVVPLLTFE.LLVH.LDGHN.FS.I.IFVPLWLSLITLMATTF..KGGNHWWFGIR.DFCQ
RetrocopyVTMAISWITIVVPLLTFEVLLVHRLDGHNTFSYIAIFVPLWLSLITLMATTFRRKGGNHWWFGIRRDFCQ
ParentalFLLEIFPFLREYGNISYDLHHEDNEEMEETPVPEPPKIAPMFRKKTRVVITQSPGKYVLPPPKLNIEMPD
FLLEIFPFLREYGNISYDL.HED.E..EET.VP..PKIAPMF.KK.RVVITQSPGKYV.PPPKLNI.MPD
RetrocopyFLLEIFPFLREYGNISYDLQHEDSEDAEETSVPDAPKIAPMFGKKARVVITQSPGKYVPPPPKLNIDMPD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Ailuropoda melanoleuca was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Ailuropoda melanoleuca was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_amel_8 retrocopy.

TSS - click to see more details

Ailuropoda melanoleuca was not studied using FANTOM5 data.

Lab - click to see more details

retro_amel_8 was not experimentally validated.

Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 26 parental genes, and 26 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000086371 retrocopy
retro_acar_65,
Ailuropoda melanoleuca ENSAMEG00000009351 1 retrocopy
retro_amel_8 ,
Bos taurus ENSBTAG000000068181 retrocopy
retro_btau_1,
Canis familiaris ENSCAFG000000191031 retrocopy
retro_cfam_159,
Cavia porcellus ENSCPOG000000036221 retrocopy
retro_cpor_5,
Dasypus novemcinctus ENSDNOG000000118641 retrocopy
retro_dnov_2451,
Dipodomys ordii ENSDORG000000150271 retrocopy
retro_dord_67,
Equus caballus ENSECAG000000093991 retrocopy
retro_ecab_426,
Felis catus ENSFCAG000000244831 retrocopy
retro_fcat_1116,
Homo sapiens ENSG000001559841 retrocopy
retro_hsap_104,
Gorilla gorilla ENSGGOG000000242681 retrocopy
retro_ggor_189,
Loxodonta africana ENSLAFG000000030441 retrocopy
retro_lafr_898,
Microcebus murinus ENSMICG000000046391 retrocopy
retro_mmur_106,
Myotis lucifugus ENSMLUG000000013191 retrocopy
retro_mluc_2075,
Macaca mulatta ENSMMUG000000028881 retrocopy
retro_mmul_310,
Mustela putorius furoENSMPUG000000118961 retrocopy
retro_mputfur_46,
Mus musculus ENSMUSG000000731391 retrocopy
retro_mmus_358,
Nomascus leucogenys ENSNLEG000000134871 retrocopy
retro_nleu_2723,
Otolemur garnettii ENSOGAG000000164141 retrocopy
retro_ogar_88,
Procavia capensis ENSPCAG000000091601 retrocopy
retro_pcap_260,
Pongo abelii ENSPPYG000000208091 retrocopy
retro_pabe_118,
Pteropus vampyrus ENSPVAG000000138221 retrocopy
retro_pvam_30,
Rattus norvegicus ENSRNOG000000110471 retrocopy
retro_rnor_6,
Sus scrofa ENSSSCG000000127391 retrocopy
retro_sscr_494,
Ictidomys tridecemlineatus ENSSTOG000000144841 retrocopy
retro_itri_8,
Tursiops truncatus ENSTTRG000000006431 retrocopy
retro_ttru_868,


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