RetrogeneDB ID: retro_mluc_2075

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430014:877219..878246(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000005472
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: TMEM185A
• Ensembl ID: ENSMLUG00000001319
• Aliases: None
• Description: None

Sequence

>retro_mluc_2075
GACTTCAACCCGAGTAAGTTCCTCATCTACGCCTGCCTGCTGCTCTTCTCCGTGCTGCTGCCCCTTCCGCTGGATGGCGT
CATCCAGTGGAGCTACTGGGCTGTCTTCGCCCCCATCTGGCTGTGGAAGCTCCTGGTCATGGCGGGCGCCTTCCGTGGGT
GCGGGCGTTTGGGCCCGAAACCCTCGCTACCGCACCGAGGGCGAGACCTGCGTGGAGTTCAAGGCCATGCTGATCGCCGT
GGGCATCCACCTGCTGCTGCTCATGTTCGAAGTCCTGGTCTGCGACCGGGTGGAGCGGGGGACACACTTCTGGCTGCTGG
TCTTCATGCCGCTCTTCTTCGTCTCCCCCGTGTCCGTGGCGGCCTGCGTGTGGGGCTTCCGACACGATCGGTCCCTGGAG
CTGGAGATCCTGTGCTCCGTCAACATCCTGCAGTTCATCTTCATCGCCCTGCGGCTGGACAGGATCATCCACTGGCCGTG
GCTGGTGGTCTTCGTGCCCCTCTGGATCCTCATGTCCTTCCTCTGCCTGGTCGTCCTCTATTACATCGTCTGGTCCCTCC
TGTTCCTGCGGTCCCTGGACGTGGTGGCCGAGCAGCGGAGAACGCACGTGACCATGGCCATCAGCTGGATCACCATCGTC
GTGCCCCTGCTCACCTTTGAGGTCCTGCTGGTTCACAGACTGGATGGCCACAATACTTTCTCCTACATCTCCATCTTCGT
CCCCCTCTGGCTTTCCTTAATCACTCTGATGGCCACCACCTTCAGGCGAAAAGGGGGCAACCACTGGTGGTTTGGTATTC
GCAGAGATTTCTGTCAGTTTCTGCTTGAAATTTTCCCGTTTTTGAGAGAATACGGGAACATTTCCTATGATCTGCATCAT
GAAGACAGTGAAGATATTGAAGAAACATCGGTTCCAGATGCGCCTAAAATTGCTCCAATATTTGGGAAGAAAGCCAGGGT
AGTTATAACCCAGAGCCCTGGAAAGTATGTTCCCCCACCTCCCAAGTTAAATATTGATATGCCAGAT

Alignment

ORF - retro_mluc_2075 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.76 %
• Parental protein coverage: 97.71 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DFSPSKFLIYACLLLFSVLLALRLDGIIQWSYWAVFAPIWLWKLMVIIGA-SVGTGVWARNPQYRAEGET
          DF.PSKFLIYACLLLFSVLL.L.LDG.IQWSYWAVFAPIWLWKL.V..GA.SVG.GVWARNP.YR.EGET
Retrocopy DFNPSKFLIYACLLLFSVLLPLPLDGVIQWSYWAVFAPIWLWKLLVMAGA>SVGAGVWARNPRYRTEGET

Parental  CVEFKAMLIAVGIHLLLLMFEVLVCDRIERGSHFWLLVFMPLFFVSPVSVAACVWGFRHDRSLELEILCS
          CVEFKAMLIAVGIHLLLLMFEVLVCDR.ERG.HFWLLVFMPLFFVSPVSVAACVWGFRHDRSLELEILCS
Retrocopy CVEFKAMLIAVGIHLLLLMFEVLVCDRVERGTHFWLLVFMPLFFVSPVSVAACVWGFRHDRSLELEILCS

Parental  VNILQFIFIALRLDKIIHWPWLVVCVPLWILMSFLCLVVLYYIVWSVLFLRSMDVIAEQRRTHITMALSW
          VNILQFIFIALRLD.IIHWPWLVV.VPLWILMSFLCLVVLYYIVWS.LFLRS.DV.AEQRRTH.TMA.SW
Retrocopy VNILQFIFIALRLDRIIHWPWLVVFVPLWILMSFLCLVVLYYIVWSLLFLRSLDVVAEQRRTHVTMAISW

Parental  MTIVVPLLTFEILLVHKLDGHNAFSCIPIFVPLWLSLITLMATTFGQKGGNHWWFGIRKDFCQFLLEIFP
          .TIVVPLLTFE.LLVH.LDGHN.FS.I.IFVPLWLSLITLMATTF..KGGNHWWFGIR.DFCQFLLEIFP
Retrocopy ITIVVPLLTFEVLLVHRLDGHNTFSYISIFVPLWLSLITLMATTFRRKGGNHWWFGIRRDFCQFLLEIFP

Parental  FLREYGNISYDIHHEDNEETEETPVPEPPKIAPLFRKKTRVVITQSPGKYILPPPKLNIEMPD
          FLREYGNISYD.HHED.E..EET.VP..PKIAP.F.KK.RVVITQSPGKY..PPPKLNI.MPD
Retrocopy FLREYGNISYDLHHEDSEDIEETSVPDAPKIAPIFGKKARVVITQSPGKYVPPPPKLNIDMPD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2075 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 22 parental genes, and 22 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000008637	1 retrocopy	retro_acar_65,
Ailuropoda melanoleuca	ENSAMEG00000009351	1 retrocopy	retro_amel_8,
Cavia porcellus	ENSCPOG00000003622	1 retrocopy	retro_cpor_5,
Dasypus novemcinctus	ENSDNOG00000011864	1 retrocopy	retro_dnov_2451,
Dipodomys ordii	ENSDORG00000015027	1 retrocopy	retro_dord_67,
Equus caballus	ENSECAG00000009399	1 retrocopy	retro_ecab_426,
Homo sapiens	ENSG00000155984	1 retrocopy	retro_hsap_104,
Gorilla gorilla	ENSGGOG00000024268	1 retrocopy	retro_ggor_189,
Loxodonta africana	ENSLAFG00000003044	1 retrocopy	retro_lafr_898,
Microcebus murinus	ENSMICG00000004639	1 retrocopy	retro_mmur_106,
Myotis lucifugus	ENSMLUG00000001319	1 retrocopy	retro_mluc_2075 ,
Macaca mulatta	ENSMMUG00000002888	1 retrocopy	retro_mmul_310,
Mustela putorius furo	ENSMPUG00000011896	1 retrocopy	retro_mputfur_46,
Mus musculus	ENSMUSG00000073139	1 retrocopy	retro_mmus_358,
Nomascus leucogenys	ENSNLEG00000013487	1 retrocopy	retro_nleu_2723,
Otolemur garnettii	ENSOGAG00000016414	1 retrocopy	retro_ogar_88,
Pongo abelii	ENSPPYG00000020809	1 retrocopy	retro_pabe_118,
Pteropus vampyrus	ENSPVAG00000013822	1 retrocopy	retro_pvam_30,
Rattus norvegicus	ENSRNOG00000011047	1 retrocopy	retro_rnor_6,
Sus scrofa	ENSSSCG00000012739	1 retrocopy	retro_sscr_494,
Ictidomys tridecemlineatus	ENSSTOG00000014484	1 retrocopy	retro_itri_8,
Tursiops truncatus	ENSTTRG00000000643	1 retrocopy	retro_ttru_868,