RetrogeneDB ID: | retro_amel_925 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192749.1:1437935..1438680(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000002193 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSAMEG00000000717 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.52 % |
Parental protein coverage: | 66.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFV |
L.DCVVMR.PNTKRSRG.GFVTYATVEE.DAAMNARP..VDGRV.EPKR.VSRE.S.RPGAHLTVKKI.V | |
Retrocopy | LMDCVVMREPNTKRSRGSGFVTYATVEEMDAAMNARPQNVDGRVMEPKRDVSREHSERPGAHLTVKKISV |
Parental | GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK |
.GI.ED.EEH.LRDY....G....................FVTF.D.D.VD.IVIQ....VNGH.CEVRK | |
Retrocopy | SGINEDSEEHRLRDYLNSVGTLKWLRSRLTKAVARR--LCFVTFNDDDFVDEIVIQNSRAVNGHTCEVRK |
Parental | ALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-GNFSGRGGFGGSRG-GGGYGGSGDGYNGF |
ALSKQEMA.AS.SQRGRS.SGNFGGG.GGGFGGNDNFG.G.G...G..G.GG..G.G.G....G...... | |
Retrocopy | ALSKQEMARASPSQRGRSASGNFGGGHGGGFGGNDNFGHG>GGYGGG*GGGGYGGRGDGFNRFGNDESNP |
Parental | GNDGGYGGGGPGYSGGSRGYG---SGGQGYDSYNNGGGGGGY |
G..G.Y...G..Y...S...G....G..G..S.....GGG.Y | |
Retrocopy | GGGGSYNDFG-NYNNQSSNFGPMKGGNFGGRSSRP*EGGGQY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000717 | 3 retrocopies |
retro_amel_1726, retro_amel_547, retro_amel_925 ,
|
Ailuropoda melanoleuca | ENSAMEG00000011920 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000009228 | 7 retrocopies | |
Mustela putorius furo | ENSMPUG00000004620 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005735 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013350 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000029707 | 3 retrocopies | |
Oreochromis niloticus | ENSONIG00000012248 | 1 retrocopy |