RetrogeneDB ID: | retro_btau_1062 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 24:59845363..59845852(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SKP1 | ||
Ensembl ID: | ENSBTAG00000025191 | ||
Aliases: | SKP1, SKP1A | ||
Description: | S-phase kinase-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ZCF3] |
Percent Identity: | 98.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPP |
MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPP | |
Retrocopy | MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPP |
Parental | PPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN |
PPEDDENKEK..DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA.MIKGKTPEEIRKTFN | |
Retrocopy | PPEDDENKEK*ADDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVAIMIKGKTPEEIRKTFN |
Parental | IKNDFTEEEEAQVRKENQWCEEK |
IKNDFTEEEEAQVRKENQWCEEK | |
Retrocopy | IKNDFTEEEEAQVRKENQWCEEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 77 .36 RPM |
ERP005899_muscle | 0 .11 RPM | 77 .18 RPM |
SRP017611_brain | 0 .18 RPM | 89 .03 RPM |
SRP017611_kidney | 0 .06 RPM | 70 .00 RPM |
SRP017611_liver | 0 .08 RPM | 24 .77 RPM |
SRP030211_testis | 0 .04 RPM | 128 .22 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000025191 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000000994 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000013613 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007560 | 5 retrocopies | |
Homo sapiens | ENSG00000113558 | 10 retrocopies | |
Gorilla gorilla | ENSGGOG00000022930 | 7 retrocopies | |
Latimeria chalumnae | ENSLACG00000016599 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016832 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017588 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000022919 | 13 retrocopies | |
Monodelphis domestica | ENSMODG00000014168 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000028707 | 8 retrocopies | |
Pongo abelii | ENSPPYG00000015783 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000005828 | 6 retrocopies |