RetrogeneDB - Parental gene ENSPPYG00000015783 details

                            
>ENSPPYG00000015783
ATGCCTTCAATTAAGTTGCAGAGTTCTGATGGAGAGATATTTGAAGTTGATGTGGAAATTGCCAAACAATCTGTGACTAT

TAAGACCATGTTGGAAGATTTGGGAATGGATGATGAAGGAGATGATGACCCAGTTCCTCTACCAAATGTGAATGCAGCAA

TATTAAAAAAGGTCATTCAGTGGTGCACCCACCACAAGGATGACCCTCCTCCTCCTGAAGATGATGAGAACAAAGAAAAG

CGAACAGACGATATTCCTGTTTGGGACCAAGAATTCCTGAAAGTTGACCAAGGAACACTTTTTGAACTCATTCTGGCTGC

AAACTACTTAGACATCAAAGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAATATGATCAAGGGGAAAACTCCTGAGG

AGATTCGCAAGACCTTCAATATCAAAAATGACTTTACTGAAGAGGAGGAAGCCCAGGTACGCAAAGAGAACCAGTGGTGT

GAAGAGAAGTGA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	147 .74 RPM
SRP007412_cerebellum	227 .27 RPM
SRP007412_heart	97 .29 RPM
SRP007412_kidney	96 .82 RPM
SRP007412_liver	55 .30 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000017810	possible_ortholog	1 retrogene	retro_amel_897,
Bos taurus	ENSBTAG00000025191	possible_ortholog	5 retrogenes	retro_btau_10, retro_btau_1062, retro_btau_1253, retro_btau_1444, retro_btau_1687,
Canis familiaris	ENSCAFG00000000994	ortholog_one2many	5 retrogenes	retro_cfam_1613, retro_cfam_779, retro_cfam_813, retro_cfam_889, retro_cfam_965,
Callithrix jacchus	ENSCJAG00000013613	ortholog_one2one	1 retrogene	retro_cjac_112,
Cavia porcellus	ENSCPOG00000005164	ortholog_one2one	8 retrogenes	retro_cpor_1038, retro_cpor_1133, retro_cpor_1345, retro_cpor_1446, retro_cpor_223, retro_cpor_243, retro_cpor_830, retro_cpor_832,
Dasypus novemcinctus	ENSDNOG00000012999	possible_ortholog	9 retrogenes	retro_dnov_1216, retro_dnov_1338, retro_dnov_2433, retro_dnov_2526, retro_dnov_2647, retro_dnov_281, retro_dnov_286, retro_dnov_389, retro_dnov_776,
Dipodomys ordii	ENSDORG00000002912	ortholog_one2one	3 retrogenes	retro_dord_338, retro_dord_512, retro_dord_720,
Equus caballus	ENSECAG00000003931	ortholog_one2one	2 retrogenes	retro_ecab_466, retro_ecab_789,
Echinops telfairi	ENSETEG00000007560	ortholog_one2one	5 retrogenes	retro_etel_1730, retro_etel_515, retro_etel_758, retro_etel_762, retro_etel_811,
Felis catus	ENSFCAG00000031140	possible_ortholog	1 retrogene	retro_fcat_653,
Homo sapiens	ENSG00000113558	possible_ortholog	10 retrogenes	retro_hsap_2193, retro_hsap_2596, retro_hsap_3321, retro_hsap_3346, retro_hsap_3863, retro_hsap_4161, retro_hsap_4163, retro_hsap_4164, retro_hsap_724, retro_hsap_972,
Gorilla gorilla	ENSGGOG00000022930	possible_ortholog	7 retrogenes	retro_ggor_1288, retro_ggor_1300, retro_ggor_2601, retro_ggor_2602, retro_ggor_2796, retro_ggor_2797, retro_ggor_778,
Latimeria chalumnae	ENSLACG00000016599	possible_ortholog	1 retrogene	retro_lcha_103,
Loxodonta africana	ENSLAFG00000016832	possible_ortholog	1 retrogene	retro_lafr_83,
Microcebus murinus	ENSMICG00000017588	possible_ortholog	3 retrogenes	retro_mmur_270, retro_mmur_803, retro_mmur_997,
Myotis lucifugus	ENSMLUG00000022919	possible_ortholog	13 retrogenes	retro_mluc_1455, retro_mluc_1738, retro_mluc_1895, retro_mluc_2009, retro_mluc_2260, retro_mluc_2261, retro_mluc_2520, retro_mluc_2527, retro_mluc_2557, retro_mluc_267, retro_mluc_383, retro_mluc_841, retro_mluc_944,
Macaca mulatta	ENSMMUG00000013046	ortholog_one2one	7 retrogenes	retro_mmul_1171, retro_mmul_2082, retro_mmul_2091, retro_mmul_2508, retro_mmul_654, retro_mmul_795, retro_mmul_919,
Monodelphis domestica	ENSMODG00000014168	ortholog_one2one	4 retrogenes	retro_mdom_1173, retro_mdom_155, retro_mdom_1648, retro_mdom_929,
Mus musculus	ENSMUSG00000036309	ortholog_one2one	1 retrogene	retro_mmus_2518,
Nomascus leucogenys	ENSNLEG00000008051	ortholog_one2one	7 retrogenes	retro_nleu_1171, retro_nleu_1615, retro_nleu_1667, retro_nleu_2290, retro_nleu_323, retro_nleu_472, retro_nleu_827,
Oryctolagus cuniculus	ENSOCUG00000022505	possible_ortholog	10 retrogenes	retro_ocun_1119, retro_ocun_1228, retro_ocun_1242, retro_ocun_1420, retro_ocun_1453, retro_ocun_1572, retro_ocun_1784, retro_ocun_397, retro_ocun_448, retro_ocun_553,
Otolemur garnettii	ENSOGAG00000028707	possible_ortholog	8 retrogenes	retro_ogar_1446, retro_ogar_1510, retro_ogar_1511, retro_ogar_1890, retro_ogar_2019, retro_ogar_2728, retro_ogar_3306, retro_ogar_581,
Ochotona princeps	ENSOPRG00000006637	ortholog_one2one	7 retrogenes	retro_opri_1199, retro_opri_188, retro_opri_23, retro_opri_513, retro_opri_547, retro_opri_902, retro_opri_955,
Pteropus vampyrus	ENSPVAG00000012427	ortholog_one2one	4 retrogenes	retro_pvam_1040, retro_pvam_1137, retro_pvam_1269, retro_pvam_503,
Rattus norvegicus	ENSRNOG00000005828	possible_ortholog	6 retrogenes	retro_rnor_1391, retro_rnor_1392, retro_rnor_1465, retro_rnor_1888, retro_rnor_2166, retro_rnor_2333,
Sorex araneus	ENSSARG00000008307	ortholog_one2one	4 retrogenes	retro_sara_241, retro_sara_446, retro_sara_492, retro_sara_609,
Tupaia belangeri	ENSTBEG00000015544	ortholog_one2one	15 retrogenes	retro_tbel_1227, retro_tbel_1279, retro_tbel_1327, retro_tbel_1758, retro_tbel_1787, retro_tbel_1903, retro_tbel_1905, retro_tbel_240, retro_tbel_3024, retro_tbel_3267, retro_tbel_3848, retro_tbel_405, retro_tbel_4095, retro_tbel_528, retro_tbel_711,
Tarsius syrichta	ENSTSYG00000010696	ortholog_one2one	11 retrogenes	retro_tsyr_1037, retro_tsyr_1370, retro_tsyr_1400, retro_tsyr_1896, retro_tsyr_1924, retro_tsyr_2058, retro_tsyr_210, retro_tsyr_336, retro_tsyr_396, retro_tsyr_464, retro_tsyr_762,
Tursiops truncatus	ENSTTRG00000016858	ortholog_one2one	6 retrogenes	retro_ttru_1344, retro_ttru_1764, retro_ttru_1801, retro_ttru_656, retro_ttru_657, retro_ttru_961,
Vicugna pacos	ENSVPAG00000001583	possible_ortholog	1 retrogene	retro_vpac_279,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_pabe_199	93.25	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_pabe_626	79.00	61.35	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_pabe_824	86.99	89.57	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_pabe_1915	63.46	61.35	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_pabe_2072	67.00	60.12	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_pabe_2736	68.60	71.17	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_pabe_2756	69.86	86.50	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPPYG00000015783 retrocopies

Parental gene:	SKP1, ENSPPYG00000015783
Aliases:	SKP1, SKP1A
Description:	S-phase kinase-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5R512]
Organism:	*Orangutan (Pongo abelii)*
Coordinates:	5:135601589..135625279(-)

Parental gene:

SKP1, ENSPPYG00000015783