Parental gene:

SKP1, ENSLACG00000016599

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH126602.1:1636344..1651629(+)


>ENSLACG00000016599
GTTAGTGTCCCCAGTCACATGAAAGTGACTGTAAAAACCAAAAATGTGAGTTCAGATGGGGAGATATTTGAAGTTGATGT
GGAAATTGCAAAACAGTCTGTAACAATCAAGACTATGTTAGAAGATTTGGGCATGGATGATGAAAGCGATGAAGATCCTG
TTCCACTGCCTAATGTTAATGCAGCTATTCTTAAAAAGGTGATACAGTGGTGTACACATCATAAGGATGACCCACCTCCC
CCAGAGGATGATGAGAACAAGGAGAAAAGGACAGATGATATCCCAGTGTGGGATCAGGAATTCCTCAAAGTAGACCAAGG
AACGCTCTTTGAGCTCATTCTGGCGGCAAACTATTTGGATATCAAGGGTCTACTTGATGTTACGTGCAAGACAGTTGCAA
ATATGATTAAAGGCAAAACCCCAGAGGAGATTCGGAAGACATTTAACATCAAAAATGACTTCACTGAGGAGGAAGAAGCA
CAGGTACGCAAAGAGAATCAGTGGTGTGAAGAGAAATGA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 58 .77 RPM
DRP000627_kidney 64 .79 RPM
DRP000627_pelvic_fin 74 .03 RPM
DRP000627_pharynx 142 .11 RPM
DRP000627_gill 93 .47 RPM
DRP000627_tail_muscle 115 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017810 possible_ortholog 1 retrogene
retro_amel_897,
Bos taurus ENSBTAG00000025191 possible_ortholog 5 retrogenes
retro_btau_10, retro_btau_1062, retro_btau_1253, retro_btau_1444, retro_btau_1687,
Canis familiaris ENSCAFG00000000994 ortholog_one2one 5 retrogenes
retro_cfam_1613, retro_cfam_779, retro_cfam_813, retro_cfam_889, retro_cfam_965,
Callithrix jacchus ENSCJAG00000013613 possible_ortholog 1 retrogene
retro_cjac_112,
Cavia porcellus ENSCPOG00000005164 possible_ortholog 8 retrogenes
retro_cpor_1038, retro_cpor_1133, retro_cpor_1345, retro_cpor_1446, retro_cpor_223, retro_cpor_243, retro_cpor_830, retro_cpor_832,
Echinops telfairi ENSETEG00000007560 possible_ortholog 5 retrogenes
retro_etel_1730, retro_etel_515, retro_etel_758, retro_etel_762, retro_etel_811,
Felis catus ENSFCAG00000031140 possible_ortholog 1 retrogene
retro_fcat_653,
Gorilla gorilla ENSGGOG00000022930 possible_ortholog 7 retrogenes
retro_ggor_1288, retro_ggor_1300, retro_ggor_2601, retro_ggor_2602, retro_ggor_2796, retro_ggor_2797, retro_ggor_778,
Loxodonta africana ENSLAFG00000016832 possible_ortholog 1 retrogene
retro_lafr_83,
Microcebus murinus ENSMICG00000017588 ortholog_one2many 3 retrogenes
retro_mmur_270, retro_mmur_803, retro_mmur_997,
Myotis lucifugus ENSMLUG00000022919 possible_ortholog 13 retrogenes
retro_mluc_1455, retro_mluc_1738, retro_mluc_1895, retro_mluc_2009, retro_mluc_2260, retro_mluc_2261, retro_mluc_2520, retro_mluc_2527, retro_mluc_2557, retro_mluc_267, retro_mluc_383, retro_mluc_841, retro_mluc_944,
Macaca mulatta ENSMMUG00000013046 possible_ortholog 7 retrogenes
retro_mmul_1171, retro_mmul_2082, retro_mmul_2091, retro_mmul_2508, retro_mmul_654, retro_mmul_795, retro_mmul_919,
Monodelphis domestica ENSMODG00000014168 possible_ortholog 4 retrogenes
retro_mdom_1173, retro_mdom_155, retro_mdom_1648, retro_mdom_929,
Pongo abelii ENSPPYG00000015783 possible_ortholog 7 retrogenes
retro_pabe_1915, retro_pabe_199, retro_pabe_2072, retro_pabe_2736, retro_pabe_2756, retro_pabe_626, retro_pabe_824,
Sorex araneus ENSSARG00000008307 possible_ortholog 4 retrogenes
retro_sara_241, retro_sara_446, retro_sara_492, retro_sara_609,
Tupaia belangeri ENSTBEG00000015544 possible_ortholog 15 retrogenes
retro_tbel_1227, retro_tbel_1279, retro_tbel_1327, retro_tbel_1758, retro_tbel_1787, retro_tbel_1903, retro_tbel_1905, retro_tbel_240, retro_tbel_3024, retro_tbel_3267, retro_tbel_3848, retro_tbel_405, retro_tbel_4095, retro_tbel_528, retro_tbel_711,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_103 95.05 61.35
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Download FASTA sequences of all ENSLACG00000016599 retrocopies