RetrogeneDB ID: | retro_btau_1063 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 24:62699282..62699764(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPSA | ||
Ensembl ID: | ENSBTAG00000009757 | ||
Aliases: | RPSA, LAMR1 | ||
Description: | 40S ribosomal protein SA [Source:UniProtKB/Swiss-Prot;Acc:P26452] |
Percent Identity: | 60.59 % |
Parental protein coverage: | 56.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIEN |
.S..LDV..MK..D...FL.AG.HLG.T...F.MEQYIY.RK.DG.YI.N.KRTWEKLL.AA.AIVA.EN | |
Retrocopy | LSWVLDVRKMKD-DTITFLPAGAHLGITDFYFPMEQYIYRRKTDGVYIRNPKRTWEKLL*AAHAIVATEN |
Parental | PADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAA-FREPRLLVVT-DPRADHQPLTEA- |
PA.V...SSRN..QRA.L.FAA........G.F.PG..TNQ.QAA.F.EPRLLVVT.DPRADHQPL.EA. | |
Retrocopy | PAAVTAASSRNLCQRAELQFAATAS---LVGYFAPGASTNQTQAA<FQEPRLLVVT<DPRADHQPLPEA< |
Parental | SYVN-LPTIALCNTDSPLRYVDIAIPCNNK |
.Y.N.L.TI.LC.TDSPL...D...P.... | |
Retrocopy | MYAN<LLTIGLCDTDSPLHSGDHPSPATRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 238 .78 RPM |
ERP005899_muscle | 0 .00 RPM | 2624 .41 RPM |
SRP017611_brain | 0 .05 RPM | 143 .57 RPM |
SRP017611_kidney | 0 .06 RPM | 562 .13 RPM |
SRP017611_liver | 0 .00 RPM | 395 .29 RPM |
SRP030211_testis | 0 .03 RPM | 299 .11 RPM |