RetrogeneDB ID:

retro_ggor_1069

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:14:76551115..76551964(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSGGOG00000015038
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1069
GAGGATGTCCTTAAGTTCCTTGTAGCAGGAACCCACTTAGGTGGCGCCAATCTTGACTTCCAGATGGAACAGTACATCTA
TAAAAGGAAAAGTGATGGCATCTATATCATAAATCTGAAGAGGACCTGGGAGAAGCTTCTGCTGGCAGCTCGTGCTATTA
TTGCCATTGAAAACCCTGCTGATGTCAGTGTTATATCCTCCAGGAATACTGGCCAGAGGGCTGTGCTGAAGTTTGCTGCT
GCCACTGAAGCCACTCCAGTTGCTGGTCACTTCACTCCTGGAACCTTCACTAACCAGATCCAGGCAGCCTTCTGGGAGCC
ACGGCTTCTTGTGGTTACTGACCCCAGGGCTGACCACCAGCCTCTCACGGAGGCATCTTATGTTAACCTACCTACCATTT
CTCTGTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCCATTCCGTGCAACAACAAGGGAGCTCGCTCAGTGGGT
TTGATGTGGTGGACGCTGGCTCGGGAAGTTCTGCGCATGCGTGGCACCATTTCTCGTGAACACCCGTGGGAGGTCATGCC
TGATCTCTACTTCTACAGAGATCCTGAAGAGATTGAAAAAGAAGAGCAGGCTGCTGCTGAAAAGGCAGTGACCAAGGAGG
AATTTCAGGGTGAATGGACTGCTCCAGCTCCTGAGTTCACTGCTACTAAGCCTGAGGTTGCAGACTGGTCTGAAGGTGTA
CAGGTGCCCTCTGTACCTATTCAGTAGTTCCCTACTGAAGACAGGAGTGCTCAGCCTGCCACAAAAGACTGGTCTGCCGC
TCCCACTGCTCAGGCCACTGAATGGGTAGGAGCAACCACTGACTGTTCT

ORF - retro_ggor_1069 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.35 %
Parental protein coverage: 95.93 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalKDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNT
.DVLKFL.AGTHLGG.NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAI.AIENPADVSVISSRNT
RetrocopyEDVLKFLVAGTHLGGANLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIIAIENPADVSVISSRNT
ParentalGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDS
GQRAVLKFAAAT.ATP.AG.FTPGTFTNQIQAAF.EPRLLVVTDPRADHQPLTEASYVNLPTI.LCNTDS
RetrocopyGQRAVLKFAAATEATPVAGHFTPGTFTNQIQAAFWEPRLLVVTDPRADHQPLTEASYVNLPTISLCNTDS
ParentalPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAV
PLRYVDIAIPCNNKGA.SVGLMWW.LAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAV
RetrocopyPLRYVDIAIPCNNKGARSVGLMWWTLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAV
ParentalTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATT
TKEEFQGEWTAPAPEFTAT.PEVADWSEGVQVPSVPIQ.FPTED.SAQPAT.DWSAAPTAQATEWVGATT
RetrocopyTKEEFQGEWTAPAPEFTATKPEVADWSEGVQVPSVPIQ*FPTEDRSAQPATKDWSAAPTAQATEWVGATT
ParentalDWS
D.S
RetrocopyDCS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 76 .20 RPM
SRP007412_cerebellum 0 .00 RPM 59 .06 RPM
SRP007412_heart 0 .00 RPM 52 .85 RPM
SRP007412_kidney 0 .04 RPM 157 .14 RPM
SRP007412_liver 0 .05 RPM 261 .04 RPM
SRP007412_testis 0 .10 RPM 90 .24 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1069 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1069 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 23 parental genes, and 351 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000041831 retrocopy
Ailuropoda melanoleuca ENSAMEG0000000896213 retrocopies
Bos taurus ENSBTAG0000000975719 retrocopies
Canis familiaris ENSCAFG0000000510127 retrocopies
Dasypus novemcinctus ENSDNOG0000000404827 retrocopies
Dipodomys ordii ENSDORG000000082671 retrocopy
Equus caballus ENSECAG000000130625 retrocopies
Echinops telfairi ENSETEG000000181604 retrocopies
Felis catus ENSFCAG0000000273922 retrocopies
Gorilla gorilla ENSGGOG00000015038 11 retrocopies
Loxodonta africana ENSLAFG000000320095 retrocopies
Macropus eugenii ENSMEUG0000000816914 retrocopies
Microcebus murinus ENSMICG0000000451832 retrocopies
Monodelphis domestica ENSMODG000000109672 retrocopies
Mustela putorius furoENSMPUG0000000246321 retrocopies
Mus musculus ENSMUSG000000325181 retrocopy
Ochotona princeps ENSOPRG0000000450516 retrocopies
Pteropus vampyrus ENSPVAG0000000779419 retrocopies
Rattus norvegicus ENSRNOG0000001864527 retrocopies
Sarcophilus harrisii ENSSHAG000000068962 retrocopies
Tupaia belangeri ENSTBEG0000001594654 retrocopies
Tursiops truncatus ENSTTRG0000001449624 retrocopies
Vicugna pacos ENSVPAG000000123074 retrocopies



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