RetrogeneDB ID: | retro_btau_1633 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 8:8177651..8178158(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPSA | ||
Ensembl ID: | ENSBTAG00000009757 | ||
Aliases: | RPSA, LAMR1 | ||
Description: | 40S ribosomal protein SA [Source:UniProtKB/Swiss-Prot;Acc:P26452] |
Percent Identity: | 53.04 % |
Parental protein coverage: | 58.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 7 |
Parental | RFTPGTFTNQIQAA-FREPRLLVVT-DPRADHQPLTEAS-YVN-LPTIALCNTDSPLRYVDIA-IPCNNK |
RF.PG..TNQ.QAA.F.E.RLLVVT.DP.AD.QPLTEA..YVN.LP....C.T...L...D...IP..N. | |
Retrocopy | RFAPGASTNQTQAA<FQELRLLVVT<DPWADRQPLTEAC<YVNFLPSV--CVTRTLLCTLDTT>IP-GNQ |
Parental | GAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR-DPEEIEKEEQAAAEKAVTKEEF-QGEWTAP |
GA.SVGL.WWML.REVL..RG..S.EH.WEV.PDLY..R...E....E..A.AE.AVTKE.F...EW... | |
Retrocopy | GAQSVGLTWWMLTREVLPVRGILSCEHSWEVVPDLYVCR>SEEIKREEQVA-AEQAVTKEDF<HREWVTS |
Parental | APEFTAAQPEVADWSEGVQVPSVPIQQF-PTEDWSAQPSTE |
A.E..A...EV...S...Q..S.P..QF.P.E.W.A.P... | |
Retrocopy | AAECNATGSEVLA*STAGQASSLPTPQF<PPEGWPAAPTAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 238 .78 RPM |
ERP005899_muscle | 0 .00 RPM | 2624 .41 RPM |
SRP017611_brain | 0 .00 RPM | 143 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 562 .13 RPM |
SRP017611_liver | 0 .00 RPM | 395 .29 RPM |
SRP030211_testis | 0 .01 RPM | 299 .11 RPM |