RetrogeneDB ID: | retro_btau_1199 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 29:40307156..40307637(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP2CB | ||
Ensembl ID: | ENSBTAG00000009245 | ||
Aliases: | None | ||
Description: | Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q0P594] |
Percent Identity: | 80.75 % |
Parental protein coverage: | 51.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | NVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPD-DRGGW |
.VWKYFTDLFD.LPLTA.V.GQI.CLHGGLSPSIDTLDHIRALD.L.EVPHEGP...LLWSDP..D.G.W | |
Retrocopy | HVWKYFTDLFDHLPLTASVAGQIVCLHGGLSPSIDTLDHIRALDHLREVPHEGPTYHLLWSDPE>DHGDW |
Parental | GISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELD |
GISP.GA.YTFGQD.SETFNHANGL.LV.RAH.LVMEGYNWC...N.VTIFSAP.YCY.CGNQAAI.ELD | |
Retrocopy | GISPQGADYTFGQDVSETFNHANGLLLVCRAHWLVMEGYNWCFA*NAVTIFSAPKYCYCCGNQAAILELD |
Parental | DTLKYSFLQFDPAPRRGEPHV |
DTLKYSFLQ.DPA..RG.PHV | |
Retrocopy | DTLKYSFLQIDPAAHRGKPHV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 62 .87 RPM |
ERP005899_muscle | 0 .00 RPM | 30 .67 RPM |
SRP017611_brain | 0 .00 RPM | 52 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 30 .35 RPM |
SRP017611_liver | 0 .00 RPM | 18 .65 RPM |
SRP030211_testis | 0 .00 RPM | 35 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001615 | 1 retrocopy | |
Bos taurus | ENSBTAG00000000469 | 1 retrocopy | |
Bos taurus | ENSBTAG00000009245 | 3 retrocopies |
retro_btau_1199 , retro_btau_1750, retro_btau_704,
|
Dasypus novemcinctus | ENSDNOG00000010906 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018123 | 4 retrocopies | |
Felis catus | ENSFCAG00000025139 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019001 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000002488 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000102 | 1 retrocopy |