RetrogeneDB ID: | retro_ogar_3188 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873738.1:2031313..2032241(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP2CB | ||
Ensembl ID: | ENSOGAG00000002488 | ||
Aliases: | None | ||
Description: | protein phosphatase 2, catalytic subunit, beta isozyme [Source:HGNC Symbol;Acc:9300] |
Percent Identity: | 82.69 % |
Parental protein coverage: | 99.68 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | DDKAFTKELDQW-VEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFR |
D.KAFTKELDQ..VEQLNECKQLNE.QVRTLC.KAKEILTKESNVQEV.C.VTVCGDVHG.FHDLMELFR | |
Retrocopy | DSKAFTKELDQV>VEQLNECKQLNEYQVRTLCKKAKEILTKESNVQEV*CSVTVCGDVHGKFHDLMELFR |
Parental | IGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNA |
IGGKSPDTNYLFMGDY.DRGYYSVETVTLLVALKV.YPE.ITIL.GN.ES.QITQVYGFYDECL.KYGNA | |
Retrocopy | IGGKSPDTNYLFMGDYGDRGYYSVETVTLLVALKVHYPECITILGGNDES*QITQVYGFYDECLQKYGNA |
Parental | NVWKYFTDLFDYLPLTALVDGQV-CIC--GGFTPSPGQTATIKTLTRKNIFLVQGPMCDLLWSDPDDRGG |
NVWKYFT.LFDYLPLT.LV.GQ....C..GG..PS......I.TL.R.......GPMCDLLWSDPDDRGG | |
Retrocopy | NVWKYFTHLFDYLPLTVLVHGQT>ILCLHGGLSPSIDTLDHIRTLDRLQEVPHEGPMCDLLWSDPDDRGG |
Parental | WGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMEL |
WGISP..AGYTFGQDISE.FNHANGLTLVSRAHQLVMEGYNWC.DRNVV.IFSAPNYCYRCGNQAAI.EL | |
Retrocopy | WGISPCSAGYTFGQDISEIFNHANGLTLVSRAHQLVMEGYNWCYDRNVVPIFSAPNYCYRCGNQAAITEL |
Parental | DDTLKYSFLQFD-PAPRRGEPHVTRRTPDYFL |
DD.LKYSFLQF..P.P..GEPHVTR.TPDYFL | |
Retrocopy | DDSLKYSFLQFT<PTPLCGEPHVTRHTPDYFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001615 | 1 retrocopy | |
Bos taurus | ENSBTAG00000009245 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010906 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018123 | 4 retrocopies | |
Felis catus | ENSFCAG00000025139 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019001 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000002488 | 1 retrocopy |
retro_ogar_3188 ,
|
Otolemur garnettii | ENSOGAG00000009695 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000000102 | 1 retrocopy |