Parental gene: | PPP2CA, ENSBTAG00000000469 |
| Aliases: | None |
| Description: | Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [Source:UniProtKB/Swiss-Prot;Acc:P67774] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 7:47425979..47450747(-) |
>ENSBTAG00000000469
ATGGACGAGAAGGTGTTCACCAAGGAGCTGGACCAGTGGATCGAGCAGCTGAACGAGTGCAAGCAGCTGTCTGAGTCCCA
GGTTAAGAGCCTCTGCGAGAAGGCTAAAGAAATCCTGACAAAAGAATCCAATGTGCAAGAAGTTCGATGTCCAGTCACTG
TCTGTGGAGATGTGCATGGGCAATTTCATGATCTCATGGAACTGTTTAGAATTGGTGGCAAATCACCAGATACAAATTAC
TTGTTTATGGGCGATTATGTTGACAGAGGATATTATTCAGTGGAAACAGTTACTCTGCTTGTAGCTCTTAAGGTTCGTTA
CCGTGAACGTATCACCATTCTTCGAGGAAATCATGAGAGCAGACAGATCACACAAGTATATGGTTTCTACGATGAGTGTT
TAAGGAAATACGGAAATGCAAATGTTTGGAAGTATTTTACAGACCTTTTTGACTATCTTCCTCTCACTGCCTTGGTGGAT
GGGCAGATCTTCTGTCTACATGGTGGCCTCTCACCATCCATAGATACACTGGATCACATCAGAGCACTTGATCGCCTACA
AGAAGTTCCTCATGAGGGTCCAATGTGTGACTTGCTGTGGTCAGATCCAGATGACCGTGGAGGTTGGGGTATATCTCCTC
GAGGAGCTGGTTACACCTTTGGGCAGGATATTTCTGAGACATTTAATCATGCCAATGGCCTCACGTTGGTGTCTAGAGCT
CATCAGCTGGTGATGGAGGGATATAACTGGTGCCATGACCGAAATGTAGTAACGATTTTCAGTGCTCCAAACTATTGTTA
TCGTTGTGGTAACCAAGCTGCAATCATGGAACTTGATGATACTCTAAAATACTCTTTCTTGCAGTTTGACCCAGCACCTC
GCAGAGGCGAGCCACATGTTACTCGTCGTACCCCAGACTACTTCCTGTAA
ATGGACGAGAAGGTGTTCACCAAGGAGCTGGACCAGTGGATCGAGCAGCTGAACGAGTGCAAGCAGCTGTCTGAGTCCCA
GGTTAAGAGCCTCTGCGAGAAGGCTAAAGAAATCCTGACAAAAGAATCCAATGTGCAAGAAGTTCGATGTCCAGTCACTG
TCTGTGGAGATGTGCATGGGCAATTTCATGATCTCATGGAACTGTTTAGAATTGGTGGCAAATCACCAGATACAAATTAC
TTGTTTATGGGCGATTATGTTGACAGAGGATATTATTCAGTGGAAACAGTTACTCTGCTTGTAGCTCTTAAGGTTCGTTA
CCGTGAACGTATCACCATTCTTCGAGGAAATCATGAGAGCAGACAGATCACACAAGTATATGGTTTCTACGATGAGTGTT
TAAGGAAATACGGAAATGCAAATGTTTGGAAGTATTTTACAGACCTTTTTGACTATCTTCCTCTCACTGCCTTGGTGGAT
GGGCAGATCTTCTGTCTACATGGTGGCCTCTCACCATCCATAGATACACTGGATCACATCAGAGCACTTGATCGCCTACA
AGAAGTTCCTCATGAGGGTCCAATGTGTGACTTGCTGTGGTCAGATCCAGATGACCGTGGAGGTTGGGGTATATCTCCTC
GAGGAGCTGGTTACACCTTTGGGCAGGATATTTCTGAGACATTTAATCATGCCAATGGCCTCACGTTGGTGTCTAGAGCT
CATCAGCTGGTGATGGAGGGATATAACTGGTGCCATGACCGAAATGTAGTAACGATTTTCAGTGCTCCAAACTATTGTTA
TCGTTGTGGTAACCAAGCTGCAATCATGGAACTTGATGATACTCTAAAATACTCTTTCTTGCAGTTTGACCCAGCACCTC
GCAGAGGCGAGCCACATGTTACTCGTCGTACCCCAGACTACTTCCTGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 169 .15 RPM |
| SRP017611_kidney | 138 .64 RPM |
| SRP017611_liver | 54 .74 RPM |
| ERP005899_muscle | 141 .53 RPM |
| ERP005899_liver | 105 .76 RPM |
| SRP030211_testis | 78 .72 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000002653 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000009245 | within_species_paralog | 3 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000013011 | ortholog_one2one | 4 retrogenes | |
| Echinops telfairi | ENSETEG00000007561 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000029685 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000010169 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000005447 | ortholog_one2one | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000016632 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000016859 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_1754 | 80.25 | 50.49 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000000469 retrocopies