RetrogeneDB ID: | retro_btau_1285 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 3:78756420..78757197(-) | ||
Located in intron of: | ENSBTAG00000005442 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSR1 | ||
Ensembl ID: | ENSBTAG00000022731 | ||
Aliases: | None | ||
Description: | Translocon-associated protein subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:A6QLP7] |
Percent Identity: | 94.62 % |
Parental protein coverage: | 90.91 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MSSLRRLLLLLLLVFPATLLLRVGPGGSLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDEPTDLAEDKEE |
M.SL.RLLLLLL.V.P.TLLLR.GPGGSLAVAQDLTEDEETVEDSII.DEDDEAEVEEDEPTDLAEDKEE | |
Retrocopy | MRSLHRLLLLLL-VLPTTLLLRGGPGGSLAVAQDLTEDEETVEDSIIDDEDDEAEVEEDEPTDLAEDKEE |
Parental | DDVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTAL |
DDVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQ.Y.FYIQNFTAL | |
Retrocopy | DDVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQNY*FYIQNFTAL |
Parental | PLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFM |
PLNTVVPPQR.ATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFM | |
Retrocopy | PLNTVVPPQR*ATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFM |
Parental | YMFLAGLGLLVVVGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSWIPQET |
YMF.AGLG.LVVVGLHQLLESRKRKRPIQK.EMGTSSQNDVDMS.IPQET | |
Retrocopy | YMFPAGLGQLVVVGLHQLLESRKRKRPIQKIEMGTSSQNDVDMS*IPQET |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 155 .15 RPM |
ERP005899_muscle | 0 .16 RPM | 230 .95 RPM |
SRP017611_brain | 0 .27 RPM | 164 .40 RPM |
SRP017611_kidney | 0 .30 RPM | 270 .81 RPM |
SRP017611_liver | 0 .45 RPM | 292 .14 RPM |
SRP030211_testis | 0 .20 RPM | 206 .71 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000022731 | 1 retrocopy |
retro_btau_1285 ,
|
Dasypus novemcinctus | ENSDNOG00000015772 | 1 retrocopy | |
Equus caballus | ENSECAG00000019520 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020111 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009083 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014234 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022608 | 1 retrocopy |