RetrogeneDB ID: | retro_itri_1850 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH394116.1:68874..69732(+) | ||
Located in intron of: | ENSSTOG00000023094 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSR1 | ||
Ensembl ID: | ENSSTOG00000022608 | ||
Aliases: | None | ||
Description: | signal sequence receptor, alpha [Source:HGNC Symbol;Acc:11323] |
Percent Identity: | 93.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MRLLPRLLLLLLLVFPATVLLRGGPAGSLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDEPTDLAEDKEE |
MRLLPRLLLLLLLVFPATVLLRG.PAGSLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDEPTDLAEDKEE | |
Retrocopy | MRLLPRLLLLLLLVFPATVLLRGRPAGSLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDEPTDLAEDKEE |
Parental | EDVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTAL |
EDVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTAL | |
Retrocopy | EDVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTAL |
Parental | PLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFM |
PLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFM | |
Retrocopy | PLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFM |
Parental | YMFLAGLGLLVVIGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSWIPQETLNQIMQSRRDKASPRRLPRK |
YMFLAGLGLLVVIGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSWIPQETLNQI.........PR....K | |
Retrocopy | YMFLAGLGLLVVIGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSWIPQETLNQINKA-SPRRLPRKQAQK |
Parental | RAQKRSVGSDE |
R....SVGSDE | |
Retrocopy | R----SVGSDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000022731 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015772 | 1 retrocopy | |
Equus caballus | ENSECAG00000019520 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020111 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009083 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014234 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022608 | 1 retrocopy |
retro_itri_1850 ,
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