RetrogeneDB ID: | retro_dnov_879 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_11757:82558..83126(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSR1 | ||
Ensembl ID: | ENSDNOG00000015772 | ||
Aliases: | None | ||
Description: | signal sequence receptor, alpha [Source:HGNC Symbol;Acc:11323] |
Percent Identity: | 71.28 % |
Parental protein coverage: | 67.13 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | FPANNIVKFLVGFTNKGTEDFIVESL-DASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEP |
F..NN..KF.VGFTNKGT..FIVESL..ASFRYP.DYQFYIQNFTALPLN.VV.PQRQATFEYSFIPAEP | |
Retrocopy | FLVNNFLKFMVGFTNKGTVEFIVESL<SASFRYP*DYQFYIQNFTALPLNPVVLPQRQATFEYSFIPAEP |
Parental | -MGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFMYMFLAGLGLLVVVGLHQLLE-S |
..GG..FGLVINL.YKDL...VFQDAVFNQTVTI.EREDGLDGET.....FL..L.L.VV..L....... | |
Retrocopy | <LGG*TFGLVINLKYKDLSSSVFQDAVFNQTVTITEREDGLDGETV---LFLISLRLAVVAVLAFINS*N |
Parental | RKRKRTIQKVEMGTSSQNDVDMSWIPQETLNQINKASPRRLPRKRAQKRSVGSDE |
.K.KR.I.KVE.GTS.Q..VDMS.IP..TLNQINK.SPRRLP.K.AQ...VGSDE | |
Retrocopy | LKCKRLIHKVEIGTSNQKNVDMSCIPWKTLNQINKVSPRRLPWKQAQEKPVGSDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 64 .95 RPM |
SRP012922_cerebellum | 0 .00 RPM | 15 .12 RPM |
SRP012922_heart | 0 .00 RPM | 14 .85 RPM |
SRP012922_kidney | 0 .00 RPM | 30 .94 RPM |
SRP012922_liver | 0 .15 RPM | 31 .12 RPM |
SRP012922_lung | 0 .31 RPM | 34 .82 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 17 .48 RPM |
SRP012922_spleen | 0 .11 RPM | 48 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000022731 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015772 | 1 retrocopy |
retro_dnov_879 ,
|
Equus caballus | ENSECAG00000019520 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020111 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009083 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014234 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022608 | 1 retrocopy |