Parental gene: | SSR1, ENSECAG00000019520 |
| Aliases: | None |
| Description: | signal sequence receptor, alpha [Source:HGNC Symbol;Acc:11323] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 20:7426993..7449628(-) |
>ENSECAG00000019520
GGTTCGGTAGCAGTGGCTCAAGATCTTACAGAAGATGAGGAAACAGTGGAAGATTCAATAATTGAAGATGAGGATGATGA
AGCAGAGGTGGAAGAAGATGAACCCACAGATTTGGCAGAAGATAAAGAGGAAGAAGATGTATCTGGTGAACCTGAAGCTT
CACCAAGTGCAGATACAACTATCCTGTTTGTGAAAGGAGAAGATTTTCCAGCAAATAACATTGTGAAGTTCCTGGTAGGC
TTTACAAACAAGGGTACAGAAGATTTTATTGTTGAATCCCTAGATGCCTCATTCCGTTATCCTCAGGACTACCAGTTTTA
TATCCAGAATTTCACAGCTCTTCCTCTGAACACTGTAGTGCCTCCCCAGAGGCAGGCAACTTTCGAGTACTCCTTCATTC
CTGCAGAGCCCATGGGTGGACGACCCTTTGGTCTAGTCATCAATCTGAACTACAAAGATTTGAATGGCAATGTATTCCAA
GATGCTGTCTTCAATCAAACAGTTACAATTATTGAAAGAGAGGATGGGTTAGATGGAGAAACAATCTTTATGTATATGTT
CCTTGCTGGTCTTGGGCTCTTGGTGGTTGTTGGCCTTCATCAACTCCTAGAATCTAGAAAGCGCAAGAGACCCATACAGA
AAGTAGAGATGGGTACAGCAAGTCAGAATGATGTTGATATGAGTTGGATTCCTCAGGAAACTTTGAATCAGATCAATAAA
GCTTCACCAAGAAGGTTGCCCAGGAAACGGGCACAGAAGCGATCAGTGGGATCTGATGAGTAA
GGTTCGGTAGCAGTGGCTCAAGATCTTACAGAAGATGAGGAAACAGTGGAAGATTCAATAATTGAAGATGAGGATGATGA
AGCAGAGGTGGAAGAAGATGAACCCACAGATTTGGCAGAAGATAAAGAGGAAGAAGATGTATCTGGTGAACCTGAAGCTT
CACCAAGTGCAGATACAACTATCCTGTTTGTGAAAGGAGAAGATTTTCCAGCAAATAACATTGTGAAGTTCCTGGTAGGC
TTTACAAACAAGGGTACAGAAGATTTTATTGTTGAATCCCTAGATGCCTCATTCCGTTATCCTCAGGACTACCAGTTTTA
TATCCAGAATTTCACAGCTCTTCCTCTGAACACTGTAGTGCCTCCCCAGAGGCAGGCAACTTTCGAGTACTCCTTCATTC
CTGCAGAGCCCATGGGTGGACGACCCTTTGGTCTAGTCATCAATCTGAACTACAAAGATTTGAATGGCAATGTATTCCAA
GATGCTGTCTTCAATCAAACAGTTACAATTATTGAAAGAGAGGATGGGTTAGATGGAGAAACAATCTTTATGTATATGTT
CCTTGCTGGTCTTGGGCTCTTGGTGGTTGTTGGCCTTCATCAACTCCTAGAATCTAGAAAGCGCAAGAGACCCATACAGA
AAGTAGAGATGGGTACAGCAAGTCAGAATGATGTTGATATGAGTTGGATTCCTCAGGAAACTTTGAATCAGATCAATAAA
GCTTCACCAAGAAGGTTGCCCAGGAAACGGGCACAGAAGCGATCAGTGGGATCTGATGAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 34 .26 RPM |
| SRP021940_embryo | 39 .87 RPM |
| SRP021940_cerebellum | 11 .74 RPM |
| SRP021940_testis | 19 .31 RPM |
| SRP021940_placental_villous | 47 .68 RPM |
| SRP021940_articular_cartilage | 60 .56 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000022731 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000015772 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000020111 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000009083 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000014234 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000022608 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_399 | 62.72 | 63.46 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000019520 retrocopies