RetrogeneDB ID: | retro_btau_1343 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 4:34666075..34666441(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C6ORF106 | ||
Ensembl ID: | ENSBTAG00000034493 | ||
Aliases: | C23H6orf106, C6orf106 | ||
Description: | None |
Percent Identity: | 61.6 % |
Parental protein coverage: | 59.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | YDFESPNISVPSMSFVEDVTIGEGESIPPDTQFIKTWRIQNSGAEAWPPGVCLKYVGGDQFGHVNMVMVR |
YDFESPNI.VPS.SFVEDVT.GE.ESIPPD.QFIKTW...NSGAEAWP..VCLKYV.GDQ.G..N.V.V. | |
Retrocopy | YDFESPNITVPSASFVEDVTLGEEESIPPDAQFIKTWQMENSGAEAWPLRVCLKYVRGDQIGCMNVVIVT |
Parental | SLEPQEIADVSVQMCSPSRAGMYQGQWRMCTATGLYYGDVIWVILSVEVGGLLGV |
SLE..EIA..SV............G....C....LY.G....V.L.VEVGGLLGV | |
Retrocopy | SLESREIAGFSVGCTAGEQG*VRTGADERCCR--LYRGGASRVLL-VEVGGLLGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 6 .63 RPM |
ERP005899_muscle | 0 .00 RPM | 21 .70 RPM |
SRP017611_brain | 0 .05 RPM | 20 .46 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .95 RPM |
SRP017611_liver | 0 .00 RPM | 24 .77 RPM |
SRP030211_testis | 0 .02 RPM | 76 .64 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000034493 | 1 retrocopy |
retro_btau_1343 ,
|
Callithrix jacchus | ENSCJAG00000015304 | 1 retrocopy | |
Homo sapiens | ENSG00000196821 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000388 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000013442 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022824 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008387 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000011264 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009350 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016519 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018068 | 1 retrocopy |