RetrogeneDB ID: | retro_hsap_2137 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:106961021..106961822(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000227513 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C6orf106 | ||
Ensembl ID: | ENSG00000196821 | ||
Aliases: | C6orf106, FP852, dJ391O22.4 | ||
Description: | chromosome 6 open reading frame 106 [Source:HGNC Symbol;Acc:21215] |
Percent Identity: | 76.75 % |
Parental protein coverage: | 89.93 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MEGMDVDLDPELMQKFSCLGTTDKDVLISEFQRLLGFQLNPAGCAFFLDMTNWNLQAAIGAYYDFESPNI |
MEGMDVD.D.ELMQ.F..L.TT.KDVLIS.FQRLLGFQLNPA.CAFFLD.TNWNLQAAIGA.Y.FES.NI | |
Retrocopy | MEGMDVDRDLELMQNFNYLSTTNKDVLISKFQRLLGFQLNPASCAFFLDRTNWNLQAAIGASYAFESSNI |
Parental | SVPSMSFVEDVTIGEGESIPPDTQFVKTWRIQNSGAEAWPPGVCLKYVGGDQFGHVNMVMVRSLEPQEIA |
SVPS.SFVEDVT..EG.SIPPDTQFVKTW.IQNS.AEAWPPGVC.KYVGGDQ.GHV.M.MVR.LEPQEI. | |
Retrocopy | SVPSVSFVEDVTLEEG*SIPPDTQFVKTWWIQNSVAEAWPPGVCPKYVGGDQVGHVSMLMVRLLEPQEIT |
Parental | DVSVQMCSPSRAGMYQGQWRMCTATGLYYGDVIWVILSVEVGGLLGVTQQLSSFETEFNT---QPHRKVE |
DV.VQMCSPSRAGMYQG..RMCTATGLYYGDVIWVILSVEVGGLL.VTQQLSSFETEFNT...Q..RK.. | |
Retrocopy | DVIVQMCSPSRAGMYQGW*RMCTATGLYYGDVIWVILSVEVGGLLEVTQQLSSFETEFNTTA*QGRRKLQ |
Parental | GNFNPFASPQKNRQSDENNLKDPGGSEFDSISKNTWAPAPDTWAPAPDQTEQDQNRLSQNS |
....PF...QKN.QSDENNL.DPGGSEF.SISKNTWA.APD..........Q....LS..S | |
Retrocopy | ----PFCLSQKNQQSDENNL*DPGGSEFYSISKNTWAAAPDQAEQDQSRLSQNSVNLSPSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 198 .34 RPM |
bodymap2_adrenal | 0 .00 RPM | 113 .95 RPM |
bodymap2_brain | 0 .00 RPM | 121 .91 RPM |
bodymap2_breast | 0 .00 RPM | 237 .08 RPM |
bodymap2_colon | 0 .00 RPM | 150 .59 RPM |
bodymap2_heart | 0 .00 RPM | 238 .28 RPM |
bodymap2_kidney | 0 .00 RPM | 153 .72 RPM |
bodymap2_liver | 0 .00 RPM | 148 .42 RPM |
bodymap2_lung | 0 .00 RPM | 215 .37 RPM |
bodymap2_lymph_node | 0 .00 RPM | 146 .04 RPM |
bodymap2_ovary | 0 .00 RPM | 110 .73 RPM |
bodymap2_prostate | 0 .00 RPM | 141 .99 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 406 .41 RPM |
bodymap2_testis | 0 .06 RPM | 160 .74 RPM |
bodymap2_thyroid | 0 .00 RPM | 227 .82 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 178 .47 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1564 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000034493 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015304 | 1 retrocopy | |
Homo sapiens | ENSG00000196821 | 1 retrocopy |
retro_hsap_2137 ,
|
Gorilla gorilla | ENSGGOG00000000388 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000013442 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022824 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008387 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000011264 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009350 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016519 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018068 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |