Parental gene: | C6orf106, ENSPPYG00000016519 |
| Aliases: | None |
| Description: | chromosome 6 open reading frame 106 [Source:HGNC Symbol;Acc:21215] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 6:34586258..34701815(-) |
>ENSPPYG00000016519
ATGGAGGGCATGGACGTGGACCTGGACCCGGAGCTGATGCAGAAGTTCAGCTGCCTGGGCACCACCGACAAGGACGTGCT
CATCTCCGAGTTCCAGAGGCTGCTCGGCTTCCAGCTCAATCCTGCCGGTTGCGCCTTCTTCCTGGACATGACCAATTGGA
ACCTACAAGCAGCAATTGGCGCCTATTATGACTTTGAGAGCCCAAACATCAGTGTGCCCTCTATGTCCTTTGTTGAAGAT
GTCACCATAGGAGAAGGGGAGTCAATACCTCCGGATACTCAGTTTGTAAAAACATGGCGGATCCAGAATTCTGGGGCAGA
GGCCTGGCCTCCAGGGGTTTGTCTTAAATATGTCGGGGGAGACCAATTTGGACATGTGAACATGGTGATGGTGAGATCGC
TAGAGCCCCAAGAGATTGCAGATGTCAGCGTCCAGATGTGCAGCCCCAGCAGAGCAGGAATGTATCAGGGACAGTGGCGG
ATGTGCACTGCTACAGGACTCTACTATGGAGATGTCATCTGGGTGATTCTCAGTGTGGAGGTGGGTGGACTTTTAGGAGT
AACGCAGCAGCTGTCATCTTTTGAAACGGAGTTCAACACACAGCCGCATCGTAAGGTGGAAGGAAACTTCAACCCTTTTG
CCTCTCCCCAAAAGAACCGACAGTCAGATGAAAACAACTTAAAAGACCGTGGGGGCTCCGAGTTCGACTCGATCAGCAAA
AACACATGGGCTCCTGCTCCTGACACATGGGCTCCTGCTCCTGACCAAACTGAGCAAGACCAGAATAGACTGTCACAGAA
CTCTGTAAATCTGTCTCCCAGCAGTCACGCAAACAACTTATCAGTAGTGACCTACAGTAAGGGGCTCCATGGGCCTTACC
CCTTCGGCCAGTCTTAA
ATGGAGGGCATGGACGTGGACCTGGACCCGGAGCTGATGCAGAAGTTCAGCTGCCTGGGCACCACCGACAAGGACGTGCT
CATCTCCGAGTTCCAGAGGCTGCTCGGCTTCCAGCTCAATCCTGCCGGTTGCGCCTTCTTCCTGGACATGACCAATTGGA
ACCTACAAGCAGCAATTGGCGCCTATTATGACTTTGAGAGCCCAAACATCAGTGTGCCCTCTATGTCCTTTGTTGAAGAT
GTCACCATAGGAGAAGGGGAGTCAATACCTCCGGATACTCAGTTTGTAAAAACATGGCGGATCCAGAATTCTGGGGCAGA
GGCCTGGCCTCCAGGGGTTTGTCTTAAATATGTCGGGGGAGACCAATTTGGACATGTGAACATGGTGATGGTGAGATCGC
TAGAGCCCCAAGAGATTGCAGATGTCAGCGTCCAGATGTGCAGCCCCAGCAGAGCAGGAATGTATCAGGGACAGTGGCGG
ATGTGCACTGCTACAGGACTCTACTATGGAGATGTCATCTGGGTGATTCTCAGTGTGGAGGTGGGTGGACTTTTAGGAGT
AACGCAGCAGCTGTCATCTTTTGAAACGGAGTTCAACACACAGCCGCATCGTAAGGTGGAAGGAAACTTCAACCCTTTTG
CCTCTCCCCAAAAGAACCGACAGTCAGATGAAAACAACTTAAAAGACCGTGGGGGCTCCGAGTTCGACTCGATCAGCAAA
AACACATGGGCTCCTGCTCCTGACACATGGGCTCCTGCTCCTGACCAAACTGAGCAAGACCAGAATAGACTGTCACAGAA
CTCTGTAAATCTGTCTCCCAGCAGTCACGCAAACAACTTATCAGTAGTGACCTACAGTAAGGGGCTCCATGGGCCTTACC
CCTTCGGCCAGTCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 220 .17 RPM |
| SRP007412_cerebellum | 220 .83 RPM |
| SRP007412_heart | 60 .33 RPM |
| SRP007412_kidney | 111 .84 RPM |
| SRP007412_liver | 75 .04 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000034493 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000015304 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000196821 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000000388 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000013442 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000022824 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000008387 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000011264 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000009350 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000018068 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1265 | 75.41 | 81.54 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1928 | 78.01 | 93.96 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000016519 retrocopies