RetrogeneDB ID: | retro_btau_1576 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 7:51481049..51481892(-) | ||
Located in intron of: | ENSBTAG00000011415 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.92603 | ||
Ensembl ID: | ENSBTAG00000021111 | ||
Aliases: | POU5F1, OCT3, OCT4 | ||
Description: | POU domain, class 5, transcription factor 1 [Source:RefSeq peptide;Acc:NP_777005] |
Percent Identity: | 97.86 % |
Parental protein coverage: | 78.06 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGHLASDFAFSPPPGGGGDGPGGPEPGWVDPRTWMSFQGPPGGSGIGPGVVPGAEVWGLPPCPPPYDLC |
MAGHLASDFAFSPPPGGGGDGPGGPEPGWVDPRTWMSFQGPPGGSGIGPGVVPGAEVWGLPPCPPPYDLC | |
Retrocopy | MAGHLASDFAFSPPPGGGGDGPGGPEPGWVDPRTWMSFQGPPGGSGIGPGVVPGAEVWGLPPCPPPYDLC |
Parental | GGMAYCAPQVGVGPVPPGGLETPQPEGEAGAGVESNSEGASPDPCAAPAGAPKLDKEKLEPNPEESQDIK |
GGMAYCAPQVGVGPVPPGGLETPQPEG.AGAGVE.NSEGASPDPCAA.AGA.KLDKEKLEPNPEESQDIK | |
Retrocopy | GGMAYCAPQVGVGPVPPGGLETPQPEGQAGAGVENNSEGASPDPCAALAGAAKLDKEKLEPNPEESQDIK |
Parental | ALQKDLEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEE |
ALQKDLEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTIC.FEALQLSFKNMCKLRPLLQKWVEE | |
Retrocopy | ALQKDLEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICHFEALQLSFKNMCKLRPLLQKWVEE |
Parental | ADNNENLQEICKAETLVQARKRKRTSIENRVRGNLESMFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCN |
ADNNENLQEICKAETLVQARKRKRTSIEN.VRGNLESMFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCN | |
Retrocopy | ADNNENLQEICKAETLVQARKRKRTSIENQVRGNLESMFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCN |
Parental | R |
R | |
Retrocopy | R |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 0 .00 RPM |
ERP005899_muscle | 0 .53 RPM | 0 .00 RPM |
SRP017611_brain | 0 .09 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .12 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
SRP030211_testis | 0 .26 RPM | 0 .69 RPM |