Parental gene: | POU5F1, ENSPTRG00000017953 |
| Aliases: | POU5F1, OTF-3, oct-3 |
| Description: | Pan troglodytes POU class 5 homeobox 1 (POU5F1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252041] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 6:31516920..31523162(-) |
>ENSPTRG00000017953
ATGGCGGGACACCTGGCTTCGGATTTCGCCTTCTCGCCCCCTCCAGGTGGTGGAGGTGATGGGCCAGGGGGGCCGGAGCC
GGGCTGGGTTGATCCTCGGACCTGGCTAAGCTTCCAAGGCCCTCCTGGAGGGCCAGGAATCGGGCCGGGGGTTGGGCCAG
GCTCTGAGGTGTGGGGGATTCCCCCATGCCCCCCGCCGTATGAGTTCTGTGGGGGGATGGCGTACTGTGGGCCCCAGGTT
GGAGTGGGGCTAGTGCCCCAAGGCGGCTTGGAGACCTCTCAGCCTGAGGGCGAAGCAGGAGTCGGGGTGGAGAGCAACTC
CGATGGGGCCTCCCCGGAGCCCTGCACCGTCACCCCTGGTGCCGTGAAGCTGGAGAAGGAGAAGCTGGAGCAAAACCCGG
AGGAGTCCCAGGACATCAAAGCTCTGCAGAAAGAACTCGAGCAATTTGCCAAGCTCCTGAAGCAGAAGAGGATCACCCTG
GGATATACACAGGCCGATGTGGGGCTCACCCTGGGGGTTCTATTTGGGAAGGTATTCAGCCAAACGACCATCTGCCGCTT
TGAGGCTCTGCAGCTTAGCTTCAAGAACATGTGTAAGCTGCGGCCCTTGCTGCAGAAGTGGGTGGAGGAAGCTGACAACA
ATGAAAATCTTCAGGAGATATGCAAAGCAGAAACCCTCGTGCAGGCCCGAAAGAGAAAGCGAACCAGTATCGAGAACCGA
GTGAGAGGCAACCTGGAGAATTTGTTCCTGCAGTGCCCGAAACCCACACTGCAGCAGATCAGCCACATCGCCCAGCAGCT
TGGGCTCGAGAAGGATGTGGTCCGAGTGTGGTTCTGTAACCGGCGCCAGAAGGGCAAGCGATCAAGCAGTGACTATGCAC
AACGAGAGGATTTTGAGGCTGCTGGGTCTCCTTTCTCAGGGGGACCAGTGTCCTTTCCTCTGGCCCCAGGGCCCCATTTT
GGTACCCCAGGCTATGGGAGCCCTCACTTCACTGCACTGTACTCCTCGGTCCCTTTCCCTGAGGGGGAAGCCTTTCCCCC
TGTCTCCGTCACCACTCTGGGCTCTCCCATGCATTCAAACTGA
ATGGCGGGACACCTGGCTTCGGATTTCGCCTTCTCGCCCCCTCCAGGTGGTGGAGGTGATGGGCCAGGGGGGCCGGAGCC
GGGCTGGGTTGATCCTCGGACCTGGCTAAGCTTCCAAGGCCCTCCTGGAGGGCCAGGAATCGGGCCGGGGGTTGGGCCAG
GCTCTGAGGTGTGGGGGATTCCCCCATGCCCCCCGCCGTATGAGTTCTGTGGGGGGATGGCGTACTGTGGGCCCCAGGTT
GGAGTGGGGCTAGTGCCCCAAGGCGGCTTGGAGACCTCTCAGCCTGAGGGCGAAGCAGGAGTCGGGGTGGAGAGCAACTC
CGATGGGGCCTCCCCGGAGCCCTGCACCGTCACCCCTGGTGCCGTGAAGCTGGAGAAGGAGAAGCTGGAGCAAAACCCGG
AGGAGTCCCAGGACATCAAAGCTCTGCAGAAAGAACTCGAGCAATTTGCCAAGCTCCTGAAGCAGAAGAGGATCACCCTG
GGATATACACAGGCCGATGTGGGGCTCACCCTGGGGGTTCTATTTGGGAAGGTATTCAGCCAAACGACCATCTGCCGCTT
TGAGGCTCTGCAGCTTAGCTTCAAGAACATGTGTAAGCTGCGGCCCTTGCTGCAGAAGTGGGTGGAGGAAGCTGACAACA
ATGAAAATCTTCAGGAGATATGCAAAGCAGAAACCCTCGTGCAGGCCCGAAAGAGAAAGCGAACCAGTATCGAGAACCGA
GTGAGAGGCAACCTGGAGAATTTGTTCCTGCAGTGCCCGAAACCCACACTGCAGCAGATCAGCCACATCGCCCAGCAGCT
TGGGCTCGAGAAGGATGTGGTCCGAGTGTGGTTCTGTAACCGGCGCCAGAAGGGCAAGCGATCAAGCAGTGACTATGCAC
AACGAGAGGATTTTGAGGCTGCTGGGTCTCCTTTCTCAGGGGGACCAGTGTCCTTTCCTCTGGCCCCAGGGCCCCATTTT
GGTACCCCAGGCTATGGGAGCCCTCACTTCACTGCACTGTACTCCTCGGTCCCTTTCCCTGAGGGGGAAGCCTTTCCCCC
TGTCTCCGTCACCACTCTGGGCTCTCCCATGCATTCAAACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 1 .05 RPM |
| SRP007412_cerebellum | 0 .79 RPM |
| SRP007412_heart | 0 .15 RPM |
| SRP007412_kidney | 0 .76 RPM |
| SRP007412_liver | 0 .26 RPM |
| SRP007412_testis | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000010377 | ortholog_one2many | 3 retrogenes | |
| Bos taurus | ENSBTAG00000021111 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000000485 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000019789 | ortholog_one2many | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000009549 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000008967 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000015357 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000001078 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000027662 | ortholog_one2one | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000013221 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000001511 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000011028 | ortholog_one2one | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000001202 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000024406 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000017160 | ortholog_one2many | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000000621 | ortholog_one2one | 3 retrogenes | |
| Ochotona princeps | ENSOPRG00000003926 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000017210 | ortholog_one2one | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000007334 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000046487 | ortholog_one2one | 4 retrogenes | |
| Sus scrofa | ENSSSCG00000001393 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000026103 | ortholog_one2many | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000013044 | ortholog_one2one | 4 retrogenes | |
| Tarsius syrichta | ENSTSYG00000007340 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_204 | 96.28 | 66.94 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_733 | 93.37 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1798 | 97.78 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2132 | 55.26 | 52.50 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_2721 | 96.39 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000017953 retrocopies