RetrogeneDB ID: | retro_fcat_1372 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:133533354..133533948(-) | ||
Located in intron of: | ENSFCAG00000004653 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POU5F1 | ||
Ensembl ID: | ENSFCAG00000001078 | ||
Aliases: | POU5F1, Oct4 | ||
Description: | POU domain, class 5, transcription factor 1 [Source:RefSeq peptide;Acc:NP_001166912] |
Percent Identity: | 64.82 % |
Parental protein coverage: | 54.17 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 0 |
Parental | GHLASDLAFSPPPGGGGDAPGGPEPGWVDPRTWLSFQGPPGGSGIGPGVGPGAEVWGIPPC--PPPYEFC |
GHLA..LAF.P..GGGGD.PG...PG.VDP.T..SFQGPPG.SGI..GVGPG.EV.GIPPC..PP..... | |
Retrocopy | GHLAPILAFPPWLGGGGDGPGTAKPGRVDPWTLQSFQGPPGDSGI-LGVGPGSEV*GIPPCPAPPFEFWV |
Parental | GGMTYCGPQVGV-GLVPQGGLETSQPEGERGAGVESNSEGASPEPC-AAPPGAVKPDKEKLEQNTEESQD |
G.........G....VPQGGLETSQ.EGE.GAGVE.NS.G..P.P....PPGAVKP.KEKLE.N.EESQD | |
Retrocopy | GWLLWTSGWSGACAPVPQGGLETSQVEGEWGAGVERNSSGGGPPPALCCPPGAVKPEKEKLE*NPEESQD |
Parental | IKALQKDLEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNM |
I.ALQKD.....KLLKQKRI..G...ADVGLTL.VLFGKVF.Q.T.C.FEAL.LSFKN. | |
Retrocopy | IRALQKDQ**LTKLLKQKRIAPGCI*ADVGLTLRVLFGKVFGQMTVCCFEAL*LSFKNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .10 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |