Parental gene:

Pou5f1, ENSMUSG00000024406

Aliases:Pou5f1, NF-A3, Oct-3, Oct-3/4, Oct-4, Oct3, Oct3/4, Oct4, Otf-3, Otf-4, Otf3, Otf3-rs7, Otf3g, Otf4
Description:POU domain, class 5, transcription factor 1 [Source:MGI Symbol;Acc:MGI:101893]
Organism:Mouse (Mus musculus)
Coordinates:17:35506036..35510776(+)


>ENSMUSG00000024406
ATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGGGTGATGGGTCAGCAGGGCTGGAGCCGGG
CTGGGTGGATCCTCGAACCTGGCTAAGCTTCCAAGGGCCTCCAGGTGGGCCTGGAATCGGACCAGGCTCAGAGGTATTGG
GGATCTCCCCATGTCCGCCCGCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGGGCCTAGTC
CCCCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAGTGGAAAGCAACTCAGAGGGAACCTCCTC
TGAGCCCTGTGCCGACCGCCCCAATGCCGTGAAGTTGGAGAAGGTGGAACCAACTCCCGAGGAGTCCCAGGACATGAAAG
CCCTGCAGAAGGAGCTAGAACAGTTTGCCAAGCTGCTGAAGCAGAAGAGGATCACCTTGGGGTACACCCAGGCCGACGTG
GGGCTCACCCTGGGCGTTCTCTTTGGAAAGGTGTTCAGCCAGACCACCATCTGTCGCTTCGAGGCCTTGCAGCTCAGCCT
TAAGAACATGTGTAAGCTGCGGCCCCTGCTGGAGAAGTGGGTGGAGGAAGCCGACAACAATGAGAACCTTCAGGAGATAT
GCAAATCGGAGACCCTGGTGCAGGCCCGGAAGAGAAAGCGAACTAGCATTGAGAACCGTGTGAGGTGGAGTCTGGAGACC
ATGTTTCTGAAGTGCCCGAAGCCCTCCCTACAGCAGATCACTCACATCGCCAATCAGCTTGGGCTAGAGAAGGATGTGGT
TCGAGTATGGTTCTGTAACCGGCGCCAGAAGGGCAAAAGATCAAGTATTGAGTATTCCCAACGAGAAGAGTATGAGGCTA
CAGGGACACCTTTCCCAGGGGGGGCTGTATCCTTTCCTCTGCCCCCAGGTCCCCACTTTGGCACCCCAGGCTATGGAAGC
CCCCACTTCACCACACTCTACTCAGTCCCTTTTCCTGAGGGCGAGGCCTTTCCCTCTGTTCCCGTCACTGCTCTGGGCTC
TCCCATGCATTCAAACTGA

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .04 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 4 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010377 ortholog_one2many 3 retrogenes
retro_amel_1057, retro_amel_1213, retro_amel_1616,
Bos taurus ENSBTAG00000021111 ortholog_one2many 2 retrogenes
retro_btau_1576, retro_btau_951,
Canis familiaris ENSCAFG00000000485 ortholog_one2one 1 retrogene
retro_cfam_1538,
Callithrix jacchus ENSCJAG00000019789 ortholog_one2many 1 retrogene
retro_cjac_123,
Dasypus novemcinctus ENSDNOG00000003949 possible_ortholog 1 retrogene
retro_dnov_2267,
Dipodomys ordii ENSDORG00000009549 ortholog_one2many 1 retrogene
retro_dord_65,
Equus caballus ENSECAG00000008967 ortholog_one2one 1 retrogene
retro_ecab_301,
Erinaceus europaeus ENSEEUG00000015357 ortholog_one2one 2 retrogenes
retro_eeur_196, retro_eeur_558,
Felis catus ENSFCAG00000001078 ortholog_one2one 3 retrogenes
retro_fcat_1372, retro_fcat_1422, retro_fcat_275,
Gallus gallus ENSGALG00000026574 possible_ortholog 1 retrogene
retro_ggal_18,
Gorilla gorilla ENSGGOG00000027662 ortholog_one2one 3 retrogenes
retro_ggor_2275, retro_ggor_295, retro_ggor_852,
Macropus eugenii ENSMEUG00000013221 ortholog_one2many 3 retrogenes
retro_meug_1146, retro_meug_1475, retro_meug_692,
Meleagris gallopavo ENSMGAG00000000739 possible_ortholog 1 retrogene
retro_mgal_8,
Microcebus murinus ENSMICG00000001511 ortholog_one2one 1 retrogene
retro_mmur_1423,
Myotis lucifugus ENSMLUG00000011028 ortholog_one2one 3 retrogenes
retro_mluc_1465, retro_mluc_2382, retro_mluc_515,
Mustela putorius furo ENSMPUG00000001202 ortholog_one2one 2 retrogenes
retro_mputfur_253, retro_mputfur_96,
Mus musculus ENSMUSG00000032015 within_species_paralog 1 retrogene
retro_mmus_476,
Oryctolagus cuniculus ENSOCUG00000017160 ortholog_one2many 3 retrogenes
retro_ocun_1175, retro_ocun_1696, retro_ocun_463,
Otolemur garnettii ENSOGAG00000000621 ortholog_one2one 3 retrogenes
retro_ogar_1406, retro_ogar_1436, retro_ogar_2229,
Ochotona princeps ENSOPRG00000003926 ortholog_one2one 2 retrogenes
retro_opri_1213, retro_opri_556,
Pongo abelii ENSPPYG00000017210 ortholog_one2one 3 retrogenes
retro_pabe_2761, retro_pabe_3294, retro_pabe_898,
Pan troglodytes ENSPTRG00000017953 ortholog_one2one 5 retrogenes
retro_ptro_1798, retro_ptro_204, retro_ptro_2132, retro_ptro_2721, retro_ptro_733,
Pteropus vampyrus ENSPVAG00000007334 ortholog_one2one 2 retrogenes
retro_pvam_724, retro_pvam_74,
Rattus norvegicus ENSRNOG00000046487 ortholog_one2one 4 retrogenes
retro_rnor_1474, retro_rnor_2186, retro_rnor_2968, retro_rnor_921,
Sus scrofa ENSSSCG00000001393 ortholog_one2one 2 retrogenes
retro_sscr_252, retro_sscr_678,
Ictidomys tridecemlineatus ENSSTOG00000026103 ortholog_one2many 3 retrogenes
retro_itri_1076, retro_itri_1705, retro_itri_951,
Tupaia belangeri ENSTBEG00000013044 ortholog_one2one 4 retrogenes
retro_tbel_3628, retro_tbel_3718, retro_tbel_3779, retro_tbel_4614,
Taeniopygia guttata ENSTGUG00000002412 possible_ortholog 1 retrogene
retro_tgut_25,
Tarsius syrichta ENSTSYG00000007340 ortholog_one2one 4 retrogenes
retro_tsyr_1508, retro_tsyr_1630, retro_tsyr_814, retro_tsyr_817,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_250 55.56 63.35
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2. retro_mmus_2201 72.41 80.40
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Download FASTA sequences of all ENSMUSG00000024406 retrocopies