RetrogeneDB ID: | retro_btau_1581 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 7:54075652..54076555(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000011938 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A15 | ||
Ensembl ID: | ENSBTAG00000011647 | ||
Aliases: | None | ||
Description: | mitochondrial ornithine transporter 1 [Source:RefSeq peptide;Acc:NP_001039791] |
Percent Identity: | 82.72 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKSNPAIQAAIDLTAGAAGGTACVLTGQPFDTMKVKMQTFPDLYRGLTDCCLKTYSQVGFRGFYKGTSPA |
MKS.PAIQAAIDLTAGA.GGTACVLTGQPFDTMKVKMQTFP.LY.GLTDC.LKTYSQVG.RGFYKGT.PA | |
Retrocopy | MKSSPAIQAAIDLTAGALGGTACVLTGQPFDTMKVKMQTFPGLYKGLTDCALKTYSQVGLRGFYKGTGPA |
Parental | LIANIAENSVLFMCYGFCQQVVRKVVGLDRQAKLSDLQNAAAGSFASAFAALVLCPTELVKCRLQTMYEM |
L.A..AENSVLFMCYGFCQ..VRKV.GLD.QAKL.DLQ.AAAGS.ASAFAAL.LCPTELVKCRLQTM.E. | |
Retrocopy | LMAYVAENSVLFMCYGFCQHFVRKVAGLDEQAKLNDLQTAAAGSIASAFAALALCPTELVKCRLQTMHEL |
Parental | ETSGKIAKSQNTVWSVVKTVFRKDGPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKDELGPV |
E.SG.IAKS..TVWSVVK...RKDGP.GFYHGL.STL...VPGYFFFFGGYELSRSFFASG.SKDELGPV | |
Retrocopy | EMSGRIAKSHDTVWSVVKSILRKDGPWGFYHGLTSTLFQVVPGYFFFFGGYELSRSFFASGGSKDELGPV |
Parental | PLMLSGGFGGICLWLAVYPVDCIKSRIQVLSMSGKQAGFIGTFISIVKNEGVPALYSGLKPTLIRAFPAN |
PLMLSGG..GICLW...YPVDCIKSRIQVLSM.GKQ.GFI.T..S.V..EG..ALYSGLK.TLIRAFPAN | |
Retrocopy | PLMLSGGIAGICLWFVIYPVDCIKSRIQVLSMFGKQTGFIRTLLSVVRTEGIAALYSGLKATLIRAFPAN |
Parental | GALFLAYEYSRKLMMNQFEAY |
.ALFLAYEYSRK.MM.QFEAY | |
Retrocopy | AALFLAYEYSRKMMMSQFEAY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 32 .88 RPM |
ERP005899_muscle | 0 .05 RPM | 31 .57 RPM |
SRP017611_brain | 0 .05 RPM | 11 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .75 RPM |
SRP017611_liver | 0 .00 RPM | 27 .41 RPM |
SRP030211_testis | 3 .23 RPM | 3 .31 RPM |
Species | RetrogeneDB ID |
---|---|
Sus scrofa | retro_sscr_688 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011723 | 1 retrocopy | |
Bos taurus | ENSBTAG00000011647 | 1 retrocopy |
retro_btau_1581 ,
|
Canis familiaris | ENSCAFG00000005955 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000004899 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014870 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031482 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016684 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000014616 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011881 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002472 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009373 | 1 retrocopy |