RetrogeneDB ID: | retro_ocun_192 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:23332449..23333355(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000001192 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000016684 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.27 % |
Parental protein coverage: | 99.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKSNPAIQAAIDLTAGAAGGTACVLTGQPFDTMKVKMQTFPDLYRGLSDCCLKTYAQVGVRGFYKGTSPA |
MK..P..QAAIDLTAGA.GGTACVLTGQPFDTMKVKMQ.FP.LY.GL.DC.LKTY..VG.RG.Y.GT.PA | |
Retrocopy | MKNSPGLQAAIDLTAGAVGGTACVLTGQPFDTMKVKMQAFPSLYSGLTDCFLKTYSHVGLRGLYRGTGPA |
Parental | LIANIAENSVLFMCYGFCQQVVRKVGGLDKQAKLSDLQNAAAGSFASAFAALVLCPTELVKCRLQAMHEM |
L.A..A.NSVLFMCYGFCQ..VR.V.GLDK.AKL.DLQ.AAAGS.ASAFAAL.LCPTELVKCRLQ.M.E. | |
Retrocopy | LMAYVAQNSVLFMCYGFCQKFVRSVAGLDKKAKLNDLQSAAAGSLASAFAALALCPTELVKCRLQTMYEL |
Parental | ETSGKIVNSQNTVWSVVKSILRKDGPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKDELGPV |
...GKI..S.NT.WSVVKSILRKDGPLGFY.GLSSTLL.EVPGYFFFFGGYELSRSFFASGRSKDELGPV | |
Retrocopy | QLLGKIAKSHNTIWSVVKSILRKDGPLGFYYGLSSTLLQEVPGYFFFFGGYELSRSFFASGRSKDELGPV |
Parental | PLMLSGGVGGICLWLAVYPVDCIKSRIQVMSMSGKQAGFTGTLLSVVRNEGIAALYSGLKPTMIRAFPAN |
PLMLSGGV.GICLWL...PVDCIKSRIQV.SM.GKQAGF.GTLL..V..EGIAALYSGLKPTM.RA.PAN | |
Retrocopy | PLMLSGGVAGICLWLVIFPVDCIKSRIQVLSMYGKQAGFFGTLLGIVKYEGIAALYSGLKPTMVRAVPAN |
Parental | GALFLAYEYSRKLMMSQFE |
GALFLAYEYSRK.MMSQ.E | |
Retrocopy | GALFLAYEYSRKMMMSQLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .32 RPM |
SRP017611_liver | 0 .00 RPM | 87 .02 RPM |
Species | RetrogeneDB ID |
---|---|
Equus caballus | retro_ecab_72 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011723 | 1 retrocopy | |
Bos taurus | ENSBTAG00000011647 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000005955 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000004899 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014870 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031482 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016684 | 2 retrocopies |
retro_ocun_192 , retro_ocun_1927,
|
Ochotona princeps | ENSOPRG00000014616 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011881 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002472 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009373 | 1 retrocopy |