RetrogeneDB ID: | retro_sara_30 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_227396:42801..43707(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSARG00000009644 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSARG00000002472 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.67 % |
Parental protein coverage: | 99.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKSNPAIQAAIDLTAGAAGGAACVLTGQPFDTMKVKMQTFPDLYRGLTDCCLKTYSQTGVRGFYKGTSPA |
MKSNP.IQA.ID.T.GA.GG.ACVLTGQPFDT.KVKMQTFP.LY.G..DCCLKTYSQ.G.RGFY.GTSPA | |
Retrocopy | MKSNPVIQATIDFTSGAIGGTACVLTGQPFDTIKVKMQTFPNLYKGFFDCCLKTYSQVGFRGFYRGTSPA |
Parental | LIANIAENSVLFMCYGFCQQVVRKVIGLDPQAKLSDLQNAAAGSFASAFASLVLCPTELVKCRLQTMFEM |
L.A..AEN..LFM.YGFCQQ.VR.V.GLD..AKLSDLQ.A.AGS.AS.FA.LVLCPTELVKCRLQ.M.EM | |
Retrocopy | LMAYVAENAALFMTYGFCQQFVRNVVGLDRHAKLSDLQSATAGSLASTFAALVLCPTELVKCRLQAMYEM |
Parental | ESSGKVTAGQNTVWSVVKGILGKDGPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFAGGRPKDELGPV |
E.SGK......TVW..VK.I..K.G..GFYHG.SSTLL.EVPGYFFFFGGYELSRSFFA.G.PKDEL.PV | |
Retrocopy | ELSGKIAKSHSTVWTMVKTIFRKEGLMGFYHGFSSTLLQEVPGYFFFFGGYELSRSFFASGTPKDELSPV |
Parental | PLMLSGGFGGICLWLAVYPVDCIKSRIQVLSMSGKQAGFVGTFISVMRNEGITALYSGLKPTMIRAFPAN |
.L..SGGFGG.CLW.AVYPVDCIKSRIQVLSMSGKQAG...TF.S..RNEG...LYSG.K.TMIRA.PAN | |
Retrocopy | YLVISGGFGGVCLWIAVYPVDCIKSRIQVLSMSGKQAGLISTFLSIVRNEGAATLYSGMKSTMIRAVPAN |
Parental | GALFLAYEYSRKLMMNQFEA |
G.L.LAYEYSRK.MM.QFEA | |
Retrocopy | GMLILAYEYSRKMMMSQFEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011723 | 1 retrocopy | |
Bos taurus | ENSBTAG00000011647 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000005955 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000004899 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014870 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031482 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016684 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000014616 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011881 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002472 | 1 retrocopy |
retro_sara_30 ,
|
Sus scrofa | ENSSSCG00000009373 | 1 retrocopy |