RetrogeneDB ID: | retro_btau_1681 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 9:85971453..85972065(+) | ||
Located in intron of: | ENSBTAG00000036287 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NFYB | ||
Ensembl ID: | ENSBTAG00000030744 | ||
Aliases: | None | ||
Description: | Nuclear transcription factor Y subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q32KW0] |
Percent Identity: | 100. % |
Parental protein coverage: | 98.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKN |
MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKN | |
Retrocopy | MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKN |
Parental | AIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQK |
AIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQK | |
Retrocopy | AIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQK |
Parental | FREAMKGEKGIGGAVTATDGLSEELTDEAFTNQLPAGLITADGQQQNVMVYTTSYQQISGVQQI |
FREAMKGEKGIGGAVTATDGLSEELTDEAFTNQLPAGLITADGQQQNVMVYTTSYQQISGVQQI | |
Retrocopy | FREAMKGEKGIGGAVTATDGLSEELTDEAFTNQLPAGLITADGQQQNVMVYTTSYQQISGVQQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .72 RPM | 43 .11 RPM |
ERP005899_muscle | 0 .63 RPM | 7 .39 RPM |
SRP017611_brain | 0 .14 RPM | 4 .16 RPM |
SRP017611_kidney | 0 .24 RPM | 5 .93 RPM |
SRP017611_liver | 0 .08 RPM | 6 .42 RPM |
SRP030211_testis | 0 .21 RPM | 7 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006686 | 1 retrocopy | |
Bos taurus | ENSBTAG00000030744 | 1 retrocopy |
retro_btau_1681 ,
|
Canis familiaris | ENSCAFG00000029177 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014610 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003213 | 1 retrocopy | |
Felis catus | ENSFCAG00000026471 | 1 retrocopy | |
Homo sapiens | ENSG00000120837 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000008866 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005468 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022570 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000012064 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006543 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004415 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000008117 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005279 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005731 | 1 retrocopy |