RetrogeneDB ID: | retro_hsap_2827 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:109635421..109635787(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000214380 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NFYB | ||
Ensembl ID: | ENSG00000120837 | ||
Aliases: | NFYB, CBF-A, CBF-B, HAP3, NF-YB | ||
Description: | nuclear transcription factor Y, beta [Source:HGNC Symbol;Acc:7805] |
Percent Identity: | 90.16 % |
Parental protein coverage: | 58.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKN |
MTMD.DSSTTDASQLG..ADYIGGSHYVIQPHDDTE.SM.D.EDTNGSK.SFREQD.YLPI.NVARIMKN | |
Retrocopy | MTMDDDSSTTDASQLGTCADYIGGSHYVIQPHDDTEESMSDQEDTNGSKVSFREQDMYLPITNVARIMKN |
Parental | AIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAM |
AIPQTGKIAKD.KECVQECVSE.ISFITSEASERCHQEK.KTINGEDILFAM | |
Retrocopy | AIPQTGKIAKDVKECVQECVSELISFITSEASERCHQEKQKTINGEDILFAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 33 .08 RPM |
bodymap2_adrenal | 0 .00 RPM | 45 .83 RPM |
bodymap2_brain | 0 .00 RPM | 60 .41 RPM |
bodymap2_breast | 0 .00 RPM | 39 .44 RPM |
bodymap2_colon | 0 .00 RPM | 99 .12 RPM |
bodymap2_heart | 0 .00 RPM | 42 .76 RPM |
bodymap2_kidney | 0 .00 RPM | 49 .90 RPM |
bodymap2_liver | 0 .00 RPM | 14 .77 RPM |
bodymap2_lung | 0 .00 RPM | 50 .55 RPM |
bodymap2_lymph_node | 0 .00 RPM | 76 .48 RPM |
bodymap2_ovary | 0 .00 RPM | 70 .19 RPM |
bodymap2_prostate | 0 .00 RPM | 81 .23 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 28 .57 RPM |
bodymap2_testis | 0 .00 RPM | 84 .78 RPM |
bodymap2_thyroid | 0 .00 RPM | 48 .57 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 31 .19 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_2201 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006686 | 1 retrocopy | |
Bos taurus | ENSBTAG00000030744 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000029177 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014610 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003213 | 1 retrocopy | |
Felis catus | ENSFCAG00000026471 | 1 retrocopy | |
Homo sapiens | ENSG00000120837 | 2 retrocopies |
retro_hsap_2827 , retro_hsap_4047,
|
Gorilla gorilla | ENSGGOG00000008866 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005468 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022570 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000012064 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006543 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004415 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000008117 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005279 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005731 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |