RetrogeneDB ID: | retro_mputfur_1531 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897214.1:163276..163771(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NFYB | ||
Ensembl ID: | ENSMPUG00000012064 | ||
Aliases: | None | ||
Description: | nuclear transcription factor Y, beta [Source:HGNC Symbol;Acc:7805] |
Percent Identity: | 70.41 % |
Parental protein coverage: | 80.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MTMDGDSATTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMK- |
MT..GDSA.TDAS..G..A...GGSHYVIQ.HDD.E.SMND.ED.NGSK.SFRE.D.YLP.ANVARIMK. | |
Retrocopy | MTTNGDSARTDASLIG-TAVHMGGSHYVIQTHDDNEHSMNDPEDKNGSKNSFREHDTYLPTANVARIMK< |
Parental | NAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYL- |
N.IPQ..K..K....C.....SE.ISFITSEA.ERCHQEK..TI.GEDILF.M.T.G.DSYVE.LK..L. | |
Retrocopy | NVIPQMEKTVKC*GRC-SRMSSELISFITSEANERCHQEKQRTIKGEDILFVMLTSGCDSYVELLKIIL> |
Parental | QKFREAMKGEKGIGGTVTATDGLSEELTE |
QKFREAMKGEKG.GG.V.ATDGLSEELTE | |
Retrocopy | QKFREAMKGEKGVGGRVIATDGLSEELTE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006686 | 1 retrocopy | |
Bos taurus | ENSBTAG00000030744 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000029177 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014610 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003213 | 1 retrocopy | |
Felis catus | ENSFCAG00000026471 | 1 retrocopy | |
Homo sapiens | ENSG00000120837 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000008866 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005468 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022570 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000012064 | 3 retrocopies |
retro_mputfur_1531 , retro_mputfur_1563, retro_mputfur_1567,
|
Nomascus leucogenys | ENSNLEG00000006543 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004415 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000008117 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005279 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005731 | 1 retrocopy |