RetrogeneDB ID: | retro_mmul_1433 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:50769473..50769803(+) | ||
Located in intron of: | ENSMMUG00000019933 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NFYB | ||
Ensembl ID: | ENSMMUG00000022570 | ||
Aliases: | None | ||
Description: | nuclear transcription factor Y subunit beta [Source:RefSeq peptide;Acc:NP_001244649] |
Percent Identity: | 97.27 % |
Parental protein coverage: | 53.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | TSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLSEELTE |
TSEASERCHQEKRKTINGEDILFAMSTLGFDS.V.PLKLYLQKFR.AMKGEKGIGGAVTATDGLSEELTE | |
Retrocopy | TSEASERCHQEKRKTINGEDILFAMSTLGFDS*VKPLKLYLQKFRKAMKGEKGIGGAVTATDGLSEELTE |
Parental | EAFTNQLPAGLITTDGQQQNVMVYTTSYQQISGVQQIQFS |
EAFTNQLPAGLITTDGQQQNVMVYTTSYQQISGVQQIQFS | |
Retrocopy | EAFTNQLPAGLITTDGQQQNVMVYTTSYQQISGVQQIQFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 22 .52 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 11 .66 RPM |
SRP007412_cerebellum | 0 .13 RPM | 14 .92 RPM |
SRP007412_heart | 0 .00 RPM | 6 .71 RPM |
SRP007412_kidney | 0 .00 RPM | 12 .68 RPM |
SRP007412_liver | 0 .00 RPM | 7 .36 RPM |
SRP007412_testis | 0 .04 RPM | 7 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006686 | 1 retrocopy | |
Bos taurus | ENSBTAG00000030744 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000029177 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014610 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003213 | 1 retrocopy | |
Felis catus | ENSFCAG00000026471 | 1 retrocopy | |
Homo sapiens | ENSG00000120837 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000008866 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005468 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022570 | 3 retrocopies |
retro_mmul_1433 , retro_mmul_2119, retro_mmul_2335,
|
Mustela putorius furo | ENSMPUG00000012064 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006543 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004415 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000008117 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005279 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005731 | 1 retrocopy |