RetrogeneDB ID: | retro_btau_1850 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:112431671..112432313(-) | ||
Located in intron of: | ENSBTAG00000047410 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB11A | ||
Ensembl ID: | ENSBTAG00000018959 | ||
Aliases: | None | ||
Description: | ras-related protein Rab-11A [Source:RefSeq peptide;Acc:NP_001033251] |
Percent Identity: | 85.98 % |
Parental protein coverage: | 99.07 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE |
GT.DD.Y.YLFK.VLIGDSGVGKSNLLSRF..NE..LESKSTIGVEFATRSIQVDGKTIK.QI.D..GQE | |
Retrocopy | GTHDDDYNYLFKAVLIGDSGVGKSNLLSRFAQNELSLESKSTIGVEFATRSIQVDGKTIKVQIQDLPGQE |
Parental | RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARA |
.Y...TSAYY.GAVGALLVYDIAKHLTYENVERWLKELRDHADSN.VIM.VGNKSDL.HLRAVP.DE.RA | |
Retrocopy | PYHSRTSAYYCGAVGALLVYDIAKHLTYENVERWLKELRDHADSNVVIMPVGNKSDLHHLRAVPADESRA |
Parental | FAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQ |
FAE.N.LSFIETSALD.TNVEA.FQTI.TEIYRIVSQKQMSDRREN.MSP.NNVVPIHVPPTTENKPKVQ | |
Retrocopy | FAEENDLSFIETSALDPTNVEAGFQTI*TEIYRIVSQKQMSDRRENNMSPGNNVVPIHVPPTTENKPKVQ |
Parental | CCQN |
CC.N | |
Retrocopy | CCRN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 22 .78 RPM |
ERP005899_muscle | 0 .05 RPM | 80 .19 RPM |
SRP017611_brain | 0 .00 RPM | 36 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 76 .70 RPM |
SRP017611_liver | 0 .00 RPM | 16 .84 RPM |
SRP030211_testis | 0 .00 RPM | 45 .73 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018959 | 1 retrocopy |
retro_btau_1850 ,
|
Bos taurus | ENSBTAG00000044207 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007333 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004920 | 5 retrocopies | |
Homo sapiens | ENSG00000103769 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014252 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000008820 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000008006 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012853 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000009335 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006573 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007188 | 1 retrocopy |