RetrogeneDB ID: | retro_hsap_715 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 10:95641045..95641556(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000227995 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB11A | ||
Ensembl ID: | ENSG00000103769 | ||
Aliases: | RAB11A, YL8 | ||
Description: | RAB11A, member RAS oncogene family [Source:HGNC Symbol;Acc:9760] |
Percent Identity: | 78.36 % |
Parental protein coverage: | 78.24 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | FATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI |
FATRSI..D.KTIKAQ.WD.AGQE.Y.AIT.AYY....GALLV.DIAKHLTYEN.E..LKEL.DH.DSN. | |
Retrocopy | FATRSIHIDRKTIKAQMWDRAGQE*YEAIT*AYYHEDIGALLV*DIAKHLTYENTE*LLKELSDHTDSNV |
Parental | VIMLVG-NKSDLRHLRAVPTDE-ARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRR |
V.ML...NKSDL.HLR.VP..E.ARA.AEKN.LSFIETSALDSTNVEA.FQTILTEI..IVSQKQMSDR. | |
Retrocopy | VVMLSWTNKSDLHHLREVPRVE>ARALAEKNDLSFIETSALDSTNVEATFQTILTEIPHIVSQKQMSDRA |
Parental | ENDMSPSNNVVPIHVPPTTENKPKVQCCQNI |
E.DMSPSNNVVP.HVPP.TENKPKVQCCQNI | |
Retrocopy | EKDMSPSNNVVPVHVPPITENKPKVQCCQNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 157 .41 RPM |
bodymap2_adrenal | 0 .00 RPM | 194 .97 RPM |
bodymap2_brain | 0 .00 RPM | 199 .12 RPM |
bodymap2_breast | 0 .00 RPM | 168 .04 RPM |
bodymap2_colon | 0 .00 RPM | 145 .56 RPM |
bodymap2_heart | 0 .00 RPM | 90 .53 RPM |
bodymap2_kidney | 0 .00 RPM | 177 .52 RPM |
bodymap2_liver | 0 .00 RPM | 52 .20 RPM |
bodymap2_lung | 0 .00 RPM | 179 .40 RPM |
bodymap2_lymph_node | 0 .00 RPM | 108 .16 RPM |
bodymap2_ovary | 0 .00 RPM | 170 .50 RPM |
bodymap2_prostate | 0 .00 RPM | 175 .12 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 71 .39 RPM |
bodymap2_testis | 0 .00 RPM | 231 .21 RPM |
bodymap2_thyroid | 0 .00 RPM | 200 .25 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 164 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_618 |
Macaca mulatta | retro_mmul_2463 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018959 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007333 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004920 | 5 retrocopies | |
Homo sapiens | ENSG00000103769 | 1 retrocopy |
retro_hsap_715 ,
|
Homo sapiens | ENSG00000172780 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014252 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000008820 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000008006 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012853 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000009335 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006573 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007188 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |