RetrogeneDB ID: | retro_btau_293 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 1:47917021..47917303(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1AX | ||
Ensembl ID: | ENSBTAG00000017633 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1A, X-chromosomal [Source:RefSeq peptide;Acc:NP_001020500] |
Percent Identity: | 68.37 % |
Parental protein coverage: | 65.28 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | KNRRRGKNENESEKR-ELVFKEDGQEY-AQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRK-KVWINTSDI |
KN..RGKNENE.EK..ELVFKEDGQEY.....K.L.NG.LE.MCFDGVK.L.HI.G.LRK.K..INTSDI | |
Retrocopy | KNKCRGKNENEPEKK<ELVFKEDGQEYICSNKKVLRNG*LEVMCFDGVKMLYHIKG*LRK<KICINTSDI |
Parental | ILVGL-RDYQDNKADVILKYNADEARSL |
ILV.L..D..DNK...ILKYNAD.AR.L | |
Retrocopy | ILVSL<MDN*DNKVGIILKYNADKARWL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 43 .69 RPM |
ERP005899_muscle | 0 .00 RPM | 103 .20 RPM |
SRP017611_brain | 0 .00 RPM | 29 .69 RPM |
SRP017611_kidney | 0 .00 RPM | 65 .08 RPM |
SRP017611_liver | 0 .00 RPM | 24 .84 RPM |
SRP030211_testis | 0 .00 RPM | 116 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017633 | 3 retrocopies |
retro_btau_1293, retro_btau_293 , retro_btau_381,
|
Callithrix jacchus | ENSCJAG00000005371 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000007518 | 3 retrocopies | |
Homo sapiens | ENSG00000173674 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012977 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000027820 | 1 retrocopy | |
Mus musculus | ENSMUSG00000067194 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008182 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020176 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022504 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005736 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013528 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010995 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000029864 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002012 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000009927 | 4 retrocopies |