RetrogeneDB ID: | retro_eeur_408 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_288351:573..789(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1AX | ||
Ensembl ID: | ENSEEUG00000007518 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1A, X-linked [Source:HGNC Symbol;Acc:3250] |
Percent Identity: | 86.11 % |
Parental protein coverage: | 50.35 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | RGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRD |
RGKNEN.S.KRELVFKEDGQE.AQVIKMLG..RLEA.CFDGVKRLCHIR.KLRKKVWI.TSDI.LVGL.D | |
Retrocopy | RGKNEN*SKKRELVFKEDGQE*AQVIKMLGSDRLEAVCFDGVKRLCHIRRKLRKKVWIKTSDITLVGL*D |
Parental | YQ |
YQ | |
Retrocopy | YQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .13 RPM | 27 .39 RPM |
SRP017611_kidney | 2 .25 RPM | 44 .63 RPM |
SRP017611_liver | 0 .96 RPM | 23 .96 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017633 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000005371 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000007518 | 3 retrocopies |
retro_eeur_408 , retro_eeur_567, retro_eeur_686,
|
Homo sapiens | ENSG00000173674 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012977 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000027820 | 1 retrocopy | |
Mus musculus | ENSMUSG00000067194 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008182 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020176 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022504 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005736 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013528 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010995 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000029864 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002012 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000009927 | 4 retrocopies |